Variant report

Variant	rs7790309
Chromosome Location	chr7:16805603-16805604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:16791492..16793805-chr7:16805072..16808217,3	K562	blood:
2	chr7:16794921..16798267-chr7:16802631..16805801,3	MCF-7	breast:
3	chr7:16794915..16798218-chr7:16804001..16806170,3	MCF-7	breast:
4	chr7:16685200..16687861-chr7:16804946..16807324,2	K562	blood:
5	chr7:16800951..16805401-chr7:16805504..16810552,5	K562	blood:

Variant related genes	Relation type
ENSG00000136261	Chromatin interaction
ENSG00000106537	Chromatin interaction
ENSG00000106524	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10248469	1.00[CEU][hapmap]
rs10265402	1.00[CEU][hapmap]
rs10499473	1.00[CEU][hapmap]
rs17169590	1.00[CEU][hapmap]
rs17169591	1.00[CEU][hapmap]
rs28622265	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60554141	1.00[EUR][1000 genomes]
rs6461274	1.00[CEU][hapmap]
rs6961256	1.00[CEU][hapmap]
rs6974411	1.00[CEU][hapmap]
rs6979312	1.00[CEU][hapmap]
rs73301594	1.00[EUR][1000 genomes]
rs73303513	1.00[EUR][1000 genomes]
rs73303517	1.00[EUR][1000 genomes]
rs73305504	1.00[EUR][1000 genomes]
rs73305505	1.00[EUR][1000 genomes]
rs73305507	1.00[EUR][1000 genomes]
rs7780556	1.00[CEU][hapmap]
rs7781486	0.88[YRI][hapmap]
rs7805673	1.00[CEU][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028125	chr7:16529160-16847225	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1024059	chr7:16639432-16836425	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16795000-16806000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:16795000-16810200	Weak transcription	HMEC	breast
3	chr7:16795000-16810400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:16795000-16828400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:16795200-16810000	Weak transcription	NHEK	skin
6	chr7:16795200-16810600	Weak transcription	Fetal Muscle Leg	muscle
7	chr7:16795400-16813000	Weak transcription	Right Ventricle	heart
8	chr7:16796200-16806400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr7:16796400-16810200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:16796600-16810400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr7:16796600-16816200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr7:16799000-16807800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr7:16799000-16810400	Weak transcription	K562	blood
14	chr7:16799600-16810000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:16799600-16813000	Weak transcription	Stomach Mucosa	stomach
16	chr7:16800600-16825600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr7:16801400-16810600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:16801600-16811200	Weak transcription	Spleen	Spleen
19	chr7:16802200-16810800	Weak transcription	Fetal Heart	heart
20	chr7:16802800-16817800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr7:16803400-16806000	Weak transcription	Gastric	stomach
22	chr7:16803400-16810200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr7:16803600-16805800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr7:16803600-16818000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr7:16803800-16825600	Weak transcription	Fetal Intestine Small	intestine
26	chr7:16804600-16805800	Weak transcription	Fetal Brain Male	brain
27	chr7:16804600-16805800	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr7:16804800-16806000	Weak transcription	Psoas Muscle	Psoas
29	chr7:16805000-16832400	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr7:16805200-16806000	Genic enhancers	Primary B cells from cord blood	blood
31	chr7:16805200-16806000	Weak transcription	Pancreas	Pancrea
32	chr7:16805200-16807200	Weak transcription	Esophagus	oesophagus
33	chr7:16805200-16808000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr7:16805200-16810600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr7:16805200-16813600	Weak transcription	Left Ventricle	heart
36	chr7:16805200-16815600	Weak transcription	Fetal Brain Female	brain
37	chr7:16805200-16815800	Weak transcription	Fetal Intestine Large	intestine
38	chr7:16805400-16805800	Weak transcription	Primary B cells from peripheral blood	blood
39	chr7:16805400-16806200	Enhancers	HUVEC	blood vessel

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