Variant report

Variant	rs6461274
Chromosome Location	chr7:16794014-16794015
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:16792720..16796708-chr7:16843218..16846000,6	MCF-7	breast:
2	chr7:16685517..16687243-chr7:16793230..16795207,2	K562	blood:
3	chr7:16793468..16795066-chr7:16813077..16814664,2	MCF-7	breast:
4	chr15:52263919..52265515-chr7:16793247..16794965,2	MCF-7	breast:
5	chr7:16793269..16796429-chr7:16820580..16823340,4	MCF-7	breast:
6	chr7:16793915..16797924-chr7:16812688..16815916,4	K562	blood:
7	chr7:16460318..16462710-chr7:16792580..16794734,3	K562	blood:
8	chr17:39676906..39679215-chr7:16792005..16794424,2	MCF-7	breast:
9	chr7:16684788..16686640-chr7:16792209..16794458,2	MCF-7	breast:
10	chr7:16735197..16737056-chr7:16793469..16795532,2	MCF-7	breast:
11	chr7:16776351..16778265-chr7:16793377..16796196,2	K562	blood:
12	chr7:16785410..16787895-chr7:16793449..16795182,2	MCF-7	breast:
13	chr7:16793297..16794819-chr7:16840473..16842534,2	MCF-7	breast:
14	chr7:16685077..16688645-chr7:16790567..16794834,4	K562	blood:
15	chr7:16793190..16795518-chr7:16923523..16926249,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000106524	Chromatin interaction
ENSG00000166477	Chromatin interaction
ENSG00000106537	Chromatin interaction
ENSG00000171346	Chromatin interaction
ENSG00000106541	Chromatin interaction
ENSG00000214960	Chromatin interaction
ENSG00000136261	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10233465	0.82[YRI][hapmap]
rs10248469	1.00[CEU][hapmap]
rs10265402	1.00[CEU][hapmap];0.87[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10277726	1.00[EUR][1000 genomes]
rs10499473	1.00[CEU][hapmap]
rs17169590	1.00[CEU][hapmap]
rs17169591	1.00[CEU][hapmap]
rs56937850	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59696533	1.00[EUR][1000 genomes]
rs59726258	1.00[EUR][1000 genomes]
rs59800459	1.00[EUR][1000 genomes]
rs60235307	0.85[AMR][1000 genomes]
rs61100071	1.00[EUR][1000 genomes]
rs6961256	1.00[CEU][hapmap]
rs6974411	1.00[CEU][hapmap]
rs6979242	1.00[EUR][1000 genomes]
rs6979312	1.00[CEU][hapmap]
rs720587	1.00[EUR][1000 genomes]
rs73299630	0.85[AMR][1000 genomes]
rs73299640	1.00[EUR][1000 genomes]
rs73299645	0.85[AMR][1000 genomes]
rs73299648	0.85[AMR][1000 genomes]
rs73310761	1.00[EUR][1000 genomes]
rs73312785	1.00[EUR][1000 genomes]
rs7780556	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7781486	0.83[YRI][hapmap]
rs7785269	1.00[EUR][1000 genomes]
rs7790309	1.00[CEU][hapmap]
rs7805673	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1028125	chr7:16529160-16847225	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1024059	chr7:16639432-16836425	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16792600-16794200	Active TSS	Breast Myoepithelial Primary Cells	Breast
2	chr7:16792800-16794200	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr7:16792800-16794200	Active TSS	iPS-18 Cell Line	embryonic stem cell
4	chr7:16792800-16794200	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr7:16792800-16794200	Active TSS	A549	lung
6	chr7:16792800-16794200	Active TSS	K562	blood
7	chr7:16792800-16794400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr7:16792800-16794400	Active TSS	H1 Cell Line	embryonic stem cell
9	chr7:16792800-16794400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:16792800-16794400	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr7:16792800-16794400	Active TSS	Hela-S3	cervix
12	chr7:16792800-16794600	Active TSS	H9 Cell Line	embryonic stem cell
13	chr7:16792800-16794800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:16792800-16794800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:16792800-16794800	Active TSS	Duodenum Mucosa	Duodenum
16	chr7:16792800-16794800	Active TSS	Fetal Kidney	kidney
17	chr7:16792800-16795000	Flanking Active TSS	Adipose Nuclei	Adipose
18	chr7:16792800-16795000	Active TSS	Brain Angular Gyrus	brain
19	chr7:16792800-16795000	Active TSS	Fetal Brain Male	brain
20	chr7:16792800-16795200	Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr7:16792800-16795400	Active TSS	Right Atrium	heart
22	chr7:16792800-16795600	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr7:16792800-16796200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr7:16792800-16796400	Active TSS	Fetal Intestine Small	intestine
25	chr7:16792800-16796600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr7:16792800-16796600	Active TSS	Fetal Brain Female	brain
27	chr7:16793000-16794200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr7:16793000-16794200	Active TSS	Primary T killer memory cells from peripheral blood	blood
29	chr7:16793000-16794200	Flanking Active TSS	Liver	Liver
30	chr7:16793000-16794200	Active TSS	Brain Cingulate Gyrus	brain
31	chr7:16793000-16794200	Active TSS	Placenta	Placenta
32	chr7:16793000-16794200	Active TSS	HSMM	muscle
33	chr7:16793000-16794200	Active TSS	HSMMtube	muscle
34	chr7:16793000-16794200	Active TSS	Osteobl	bone
35	chr7:16793000-16794400	Active TSS	HUES48 Cell Line	embryonic stem cell
36	chr7:16793000-16794400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr7:16793000-16794400	Active TSS	Fetal Heart	heart
38	chr7:16793000-16794400	Active TSS	NHDF-Ad	bronchial
39	chr7:16793000-16794600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr7:16793000-16794600	Active TSS	Brain Substantia Nigra	brain
41	chr7:16793000-16794600	Active TSS	Placenta Amnion	Placenta Amnion
42	chr7:16793000-16794800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr7:16793000-16794800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr7:16793000-16794800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr7:16793000-16794800	Active TSS	Esophagus	oesophagus
46	chr7:16793000-16794800	Active TSS	Rectal Mucosa Donor 31	rectum
47	chr7:16793000-16794800	Active TSS	NHLF	lung
48	chr7:16793000-16795000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr7:16793000-16795000	Active TSS	Colonic Mucosa	Colon
50	chr7:16793000-16795000	Active TSS	Duodenum Smooth Muscle	Duodenum

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