Variant report

Variant	rs73312785
Chromosome Location	chr7:16709145-16709146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:16708115..16710287-chr7:16714161..16717064,2	MCF-7	breast:
2	chr7:16684388..16690329-chr7:16705903..16711033,15	MCF-7	breast:
3	chr7:16702699..16705124-chr7:16707295..16709710,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136261	Chromatin interaction
ENSG00000106524	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10243410	1.00[EUR][1000 genomes]
rs10265402	1.00[EUR][1000 genomes]
rs10277726	1.00[EUR][1000 genomes]
rs17169515	1.00[EUR][1000 genomes]
rs17169517	1.00[EUR][1000 genomes]
rs17169532	1.00[EUR][1000 genomes]
rs56937850	1.00[EUR][1000 genomes]
rs59696533	1.00[EUR][1000 genomes]
rs59726258	1.00[EUR][1000 genomes]
rs59800459	1.00[EUR][1000 genomes]
rs61100071	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6461274	1.00[EUR][1000 genomes]
rs6979242	1.00[EUR][1000 genomes]
rs720587	1.00[EUR][1000 genomes]
rs73295225	1.00[EUR][1000 genomes]
rs73295229	1.00[EUR][1000 genomes]
rs73299640	1.00[EUR][1000 genomes]
rs73310761	1.00[EUR][1000 genomes]
rs7779846	1.00[EUR][1000 genomes]
rs7780556	1.00[EUR][1000 genomes]
rs7785269	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1028125	chr7:16529160-16847225	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv830912	chr7:16623196-16791974	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1024059	chr7:16639432-16836425	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16686800-16734400	Weak transcription	Lung	lung
2	chr7:16687600-16730400	Weak transcription	Thymus	Thymus
3	chr7:16691400-16714400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr7:16691800-16714600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr7:16692800-16720800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr7:16693400-16714400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr7:16695600-16714400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr7:16697800-16714400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:16697800-16714800	Weak transcription	Ovary	ovary
10	chr7:16697800-16717400	Weak transcription	Brain Angular Gyrus	brain
11	chr7:16697800-16734400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:16697800-16736400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr7:16697800-16736400	Weak transcription	Fetal Brain Male	brain
14	chr7:16700600-16713600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:16700600-16715000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr7:16700800-16714400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr7:16701000-16714000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr7:16701000-16714800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr7:16701000-16720200	Weak transcription	Gastric	stomach
20	chr7:16701000-16721200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr7:16701200-16721000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr7:16701200-16724600	Weak transcription	Small Intestine	intestine
23	chr7:16701200-16734000	Weak transcription	Esophagus	oesophagus
24	chr7:16701200-16736200	Weak transcription	Pancreas	Pancrea
25	chr7:16701200-16736600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr7:16701800-16752800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr7:16702400-16714400	Weak transcription	Fetal Lung	lung
28	chr7:16702400-16734400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr7:16702600-16720800	Weak transcription	Colon Smooth Muscle	Colon
30	chr7:16702600-16734400	Weak transcription	Spleen	Spleen
31	chr7:16703800-16714600	Weak transcription	Fetal Kidney	kidney
32	chr7:16703800-16723800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr7:16704000-16710400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:16704200-16715000	Weak transcription	Right Ventricle	heart
35	chr7:16704200-16737600	Weak transcription	Aorta	Aorta
36	chr7:16704800-16710600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr7:16704800-16710600	Strong transcription	HUVEC	blood vessel
38	chr7:16705000-16710400	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr7:16705000-16715000	Weak transcription	Psoas Muscle	Psoas
40	chr7:16705600-16714200	Weak transcription	Liver	Liver
41	chr7:16705800-16717200	Strong transcription	Primary hematopoietic stem cells	blood
42	chr7:16706400-16709200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr7:16706400-16709600	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr7:16706400-16710600	Enhancers	Adipose Nuclei	Adipose
45	chr7:16706400-16712600	Strong transcription	Primary T cells from cord blood	blood
46	chr7:16706600-16709600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr7:16706600-16714400	Weak transcription	Brain Germinal Matrix	brain
48	chr7:16706800-16710200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr7:16706800-16711200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr7:16706800-16713600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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