Variant report

Variant	rs59696533
Chromosome Location	chr7:16716844-16716845
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:16685658..16687977-chr7:16715870..16717825,2	MCF-7	breast:
2	chr7:16684217..16689430-chr7:16716582..16724676,11	MCF-7	breast:
3	chr7:16708115..16710287-chr7:16714161..16717064,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136261	Chromatin interaction
ENSG00000106524	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10243410	1.00[EUR][1000 genomes]
rs10265402	1.00[EUR][1000 genomes]
rs10277726	1.00[EUR][1000 genomes]
rs17169515	1.00[EUR][1000 genomes]
rs17169517	1.00[EUR][1000 genomes]
rs17169532	1.00[EUR][1000 genomes]
rs56937850	1.00[EUR][1000 genomes]
rs59726258	1.00[EUR][1000 genomes]
rs59800459	1.00[EUR][1000 genomes]
rs61100071	1.00[EUR][1000 genomes]
rs6461274	1.00[EUR][1000 genomes]
rs6979242	1.00[EUR][1000 genomes]
rs720587	1.00[EUR][1000 genomes]
rs73065805	1.00[AMR][1000 genomes]
rs73295225	1.00[EUR][1000 genomes]
rs73295229	1.00[EUR][1000 genomes]
rs73299640	1.00[EUR][1000 genomes]
rs73310761	1.00[EUR][1000 genomes]
rs73312785	1.00[EUR][1000 genomes]
rs7779846	1.00[EUR][1000 genomes]
rs7780556	1.00[EUR][1000 genomes]
rs7785269	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1028125	chr7:16529160-16847225	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv830912	chr7:16623196-16791974	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1024059	chr7:16639432-16836425	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv464397	chr7:16709708-16782767	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv606338	chr7:16709708-16782767	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv887760	chr7:16714974-16776257	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16686800-16734400	Weak transcription	Lung	lung
2	chr7:16687600-16730400	Weak transcription	Thymus	Thymus
3	chr7:16692800-16720800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr7:16697800-16717400	Weak transcription	Brain Angular Gyrus	brain
5	chr7:16697800-16734400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:16697800-16736400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr7:16697800-16736400	Weak transcription	Fetal Brain Male	brain
8	chr7:16701000-16720200	Weak transcription	Gastric	stomach
9	chr7:16701000-16721200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr7:16701200-16721000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr7:16701200-16724600	Weak transcription	Small Intestine	intestine
12	chr7:16701200-16734000	Weak transcription	Esophagus	oesophagus
13	chr7:16701200-16736200	Weak transcription	Pancreas	Pancrea
14	chr7:16701200-16736600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr7:16701800-16752800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr7:16702400-16734400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr7:16702600-16720800	Weak transcription	Colon Smooth Muscle	Colon
18	chr7:16702600-16734400	Weak transcription	Spleen	Spleen
19	chr7:16703800-16723800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr7:16704200-16737600	Weak transcription	Aorta	Aorta
21	chr7:16705800-16717200	Strong transcription	Primary hematopoietic stem cells	blood
22	chr7:16706800-16717400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr7:16707800-16719800	Weak transcription	Fetal Brain Female	brain
24	chr7:16708000-16721000	Weak transcription	Brain Anterior Caudate	brain
25	chr7:16708200-16737400	Weak transcription	Brain Substantia Nigra	brain
26	chr7:16708400-16719000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr7:16708400-16730800	Weak transcription	Stomach Mucosa	stomach
28	chr7:16708400-16736200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr7:16708800-16747800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr7:16709800-16717800	Weak transcription	NHEK	skin
31	chr7:16710200-16752400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr7:16710400-16720000	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr7:16710400-16721800	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr7:16710400-16730800	Weak transcription	NHLF	lung
35	chr7:16710800-16719000	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr7:16710800-16724200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr7:16711200-16721000	Weak transcription	Fetal Heart	heart
38	chr7:16711400-16730800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr7:16712200-16719600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr7:16712200-16723600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr7:16712400-16737400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr7:16712600-16729800	Strong transcription	K562	blood
43	chr7:16713200-16723200	Strong transcription	Dnd41	blood
44	chr7:16713600-16717800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr7:16713600-16718200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr7:16713600-16721000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr7:16713600-16723600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr7:16713600-16723800	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr7:16713800-16722200	Strong transcription	Fetal Thymus	thymus
50	chr7:16713800-16726000	Strong transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links