Variant report

Variant	rs7791562
Chromosome Location	chr7:50485694-50485695
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:50181242..50182508-chr7:50485453..50486419,3	K562	blood:
2	chr7:50484672..50487398-chr7:50490393..50493667,4	K562	blood:
3	chr7:50244665..50245593-chr7:50485405..50486013,4	MCF-7	breast:
4	chr7:50484194..50487347-chr7:50489470..50493667,5	K562	blood:
5	chr7:50158832..50160033-chr7:50485413..50486368,7	MCF-7	breast:
6	chr7:50247609..50248195-chr7:50485491..50486034,2	K562	blood:
7	chr7:50159434..50160127-chr7:50485653..50486534,3	K562	blood:
8	chr7:50181654..50182562-chr7:50485410..50486472,6	MCF-7	breast:
9	chr7:50188357..50189315-chr7:50485544..50486298,2	K562	blood:
10	chr7:50473414..50475429-chr7:50484863..50486654,2	K562	blood:
11	chr7:50198460..50199386-chr7:50485402..50486365,4	K562	blood:
12	chr7:50485524..50486325-chr7:50496721..50497605,2	MCF-7	breast:
13	chr7:50131789..50132494-chr7:50485491..50486334,3	MCF-7	breast:
14	chr7:50313145..50313783-chr7:50485463..50486082,2	MCF-7	breast:
15	chr7:50244500..50246080-chr7:50485390..50486198,6	K562	blood:
16	chr7:50131802..50132527-chr7:50485456..50486116,2	K562	blood:
17	chr7:50244573..50245590-chr7:50485442..50486430,7	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FIGNL1-3	chr7:50485641-50485875	l_3413_chr7:50485640-50488510_testes

No data

Variant related genes	Relation type
ENSG00000228005	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1007702	0.86[AFR][1000 genomes]
rs1007749	0.86[AFR][1000 genomes]
rs11575304	0.86[AFR][1000 genomes]
rs11575400	0.86[AFR][1000 genomes]
rs11575413	0.86[AFR][1000 genomes]
rs11575424	0.86[AFR][1000 genomes]
rs11575425	0.86[AFR][1000 genomes]
rs11575460	0.86[AFR][1000 genomes]
rs12532576	0.86[AFR][1000 genomes]
rs1451367	0.87[AFR][1000 genomes]
rs17665398	0.86[AFR][1000 genomes]
rs17665588	0.86[AFR][1000 genomes]
rs17665670	0.86[AFR][1000 genomes]
rs1817073	0.86[AFR][1000 genomes]
rs3735276	1.00[AFR][1000 genomes]
rs4077492	0.87[AFR][1000 genomes]
rs4947580	0.86[AFR][1000 genomes]
rs4948201	0.86[AFR][1000 genomes]
rs4948216	0.86[AFR][1000 genomes]
rs6592962	0.86[AFR][1000 genomes]
rs6947293	0.86[AFR][1000 genomes]
rs6951323	0.86[AFR][1000 genomes]
rs6953661	0.86[AFR][1000 genomes]
rs6959596	0.86[AFR][1000 genomes]
rs6968322	0.86[AFR][1000 genomes]
rs731689	0.86[AFR][1000 genomes]
rs7792474	0.86[AFR][1000 genomes]
rs7797311	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv515738	chr7:50476109-50494207	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50472400-50486400	Enhancers	Primary B cells from peripheral blood	blood
2	chr7:50481400-50486000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:50481600-50486200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:50483000-50486400	Enhancers	Thymus	Thymus
5	chr7:50483000-50486800	Enhancers	Fetal Thymus	thymus
6	chr7:50483200-50486200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:50483400-50486200	Enhancers	Primary T cells fromperipheralblood	blood
8	chr7:50483400-50486200	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr7:50483400-50488800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr7:50484600-50486000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:50484600-50486000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:50484600-50486000	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr7:50484600-50486200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr7:50484600-50489000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr7:50484600-50489000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:50484800-50486000	Weak transcription	K562	blood
17	chr7:50484800-50486200	Enhancers	Primary B cells from cord blood	blood
18	chr7:50484800-50488400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr7:50484800-50488800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:50485000-50486200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr7:50485000-50486400	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr7:50485000-50490800	Weak transcription	Spleen	Spleen
23	chr7:50485200-50486200	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr7:50485400-50490400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr7:50485600-50486000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr7:50485600-50486400	Enhancers	Monocytes-CD14+_RO01746	blood

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