Variant report

Variant	rs7797311
Chromosome Location	chr7:50645452-50645453
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:50625436..50627457-chr7:50643503..50646245,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1007702	1.00[AFR][1000 genomes]
rs1007749	1.00[AFR][1000 genomes]
rs11575304	1.00[AFR][1000 genomes]
rs11575400	1.00[AFR][1000 genomes]
rs11575413	1.00[AFR][1000 genomes]
rs11575424	1.00[AFR][1000 genomes]
rs11575425	1.00[AFR][1000 genomes]
rs11575460	1.00[AFR][1000 genomes]
rs17665398	1.00[AFR][1000 genomes]
rs17665588	1.00[AFR][1000 genomes]
rs17665670	1.00[AFR][1000 genomes]
rs1817073	1.00[AFR][1000 genomes]
rs3735276	0.86[AFR][1000 genomes]
rs4947580	1.00[AFR][1000 genomes]
rs4948201	1.00[AFR][1000 genomes]
rs4948216	1.00[AFR][1000 genomes]
rs6592962	1.00[AFR][1000 genomes]
rs6947293	1.00[AFR][1000 genomes]
rs6951323	1.00[AFR][1000 genomes]
rs6953661	1.00[AFR][1000 genomes]
rs6959596	1.00[AFR][1000 genomes]
rs6968322	1.00[AFR][1000 genomes]
rs731689	1.00[AFR][1000 genomes]
rs7791562	0.86[AFR][1000 genomes]
rs7792474	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1015758	chr7:50565404-50768153	Flanking Active TSS Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1023228	chr7:50573214-50777634	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1032882	chr7:50611138-50775257	Genic enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv538834	chr7:50611138-50775257	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	esv3370357	chr7:50638271-50651392	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50645000-50646600	Enhancers	Duodenum Mucosa	Duodenum
2	chr7:50645200-50646600	Enhancers	Fetal Intestine Large	intestine
3	chr7:50645200-50648600	Enhancers	Fetal Intestine Small	intestine

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