Variant report

Variant	rs7792173
Chromosome Location	chr7:79669227-79669228
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10215621	0.92[ASN][1000 genomes]
rs10227476	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10228634	0.82[ASN][1000 genomes]
rs10228945	0.92[EUR][1000 genomes]
rs10239028	0.88[EUR][1000 genomes]
rs10250102	0.92[EUR][1000 genomes]
rs10250164	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10268369	0.93[EUR][1000 genomes]
rs10271308	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10275775	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1034722	0.92[EUR][1000 genomes]
rs10486922	0.88[EUR][1000 genomes]
rs1074944	0.88[EUR][1000 genomes]
rs11770145	0.86[EUR][1000 genomes]
rs1319268	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17803489	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2007845	0.90[EUR][1000 genomes]
rs2189450	0.93[EUR][1000 genomes]
rs28601738	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4727990	0.92[EUR][1000 genomes]
rs4731143	0.81[ASN][1000 genomes]
rs4731144	0.82[ASN][1000 genomes]
rs4731145	0.82[ASN][1000 genomes]
rs4731146	0.82[ASN][1000 genomes]
rs4731190	0.87[EUR][1000 genomes]
rs61086456	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6466904	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6466926	0.87[EUR][1000 genomes]
rs6466928	0.83[EUR][1000 genomes]
rs6945977	0.82[ASN][1000 genomes]
rs6954322	0.91[EUR][1000 genomes]
rs6963566	0.88[EUR][1000 genomes]
rs6966542	0.88[EUR][1000 genomes]
rs6973019	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6975657	0.91[EUR][1000 genomes]
rs7778622	0.83[ASN][1000 genomes]
rs7778809	0.92[EUR][1000 genomes]
rs7799547	0.89[EUR][1000 genomes]
rs7805603	0.92[EUR][1000 genomes]
rs970112	0.90[EUR][1000 genomes]
rs970113	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv607676	chr7:79636682-79687844	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv818527	chr7:79636682-79687844	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607677	chr7:79636682-79693050	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv470344	chr7:79659914-79701003	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv607678	chr7:79665817-79726578	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79668600-79669400	Enhancers	Fetal Lung	lung
2	chr7:79668800-79669400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr7:79669200-79670000	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links