Variant report

Variant	rs17803489
Chromosome Location	chr7:79677089-79677090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:78216508..78217230-chr7:79676834..79677486,3	MCF-7	breast:
2	chr7:78926978..78927922-chr7:79676854..79677685,3	MCF-7	breast:
3	chr7:78901152..78901823-chr7:79676996..79677853,2	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1012825	0.83[ASN][1000 genomes]
rs10215621	0.81[ASN][1000 genomes]
rs10227476	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10228945	0.92[EUR][1000 genomes]
rs10239028	0.88[EUR][1000 genomes]
rs10250102	0.91[EUR][1000 genomes]
rs10250164	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10268369	0.92[EUR][1000 genomes]
rs10270142	0.92[ASN][1000 genomes]
rs10271308	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10275775	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1034699	0.85[ASN][1000 genomes]
rs1034701	0.85[ASN][1000 genomes]
rs1034722	0.93[EUR][1000 genomes]
rs10486922	0.88[EUR][1000 genomes]
rs1074944	0.88[EUR][1000 genomes]
rs10954036	0.89[ASN][1000 genomes]
rs11769881	0.92[ASN][1000 genomes]
rs11770145	0.87[EUR][1000 genomes]
rs11975430	0.83[ASN][1000 genomes]
rs12154241	0.91[ASN][1000 genomes]
rs12154320	0.91[ASN][1000 genomes]
rs1319268	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13437829	0.85[ASN][1000 genomes]
rs17804483	0.83[ASN][1000 genomes]
rs2007845	0.91[EUR][1000 genomes]
rs2012262	0.84[ASN][1000 genomes]
rs2189450	0.92[EUR][1000 genomes]
rs28588381	0.91[ASN][1000 genomes]
rs28601738	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28609969	0.85[ASN][1000 genomes]
rs28698330	0.85[ASN][1000 genomes]
rs4727990	0.92[EUR][1000 genomes]
rs4727999	0.90[ASN][1000 genomes]
rs4731190	0.88[EUR][1000 genomes]
rs58785310	0.87[ASN][1000 genomes]
rs61086456	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466904	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466916	0.91[ASN][1000 genomes]
rs6466926	0.87[EUR][1000 genomes]
rs6466928	0.84[EUR][1000 genomes]
rs67486586	0.85[ASN][1000 genomes]
rs6945977	0.88[ASN][1000 genomes]
rs6954322	0.92[EUR][1000 genomes]
rs6963566	0.88[EUR][1000 genomes]
rs6966238	0.83[ASN][1000 genomes]
rs6966542	0.88[EUR][1000 genomes]
rs6973019	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6975657	0.91[EUR][1000 genomes]
rs7778622	0.90[ASN][1000 genomes]
rs7778809	0.93[EUR][1000 genomes]
rs7783336	0.85[ASN][1000 genomes]
rs7792173	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7799402	0.85[ASN][1000 genomes]
rs7799547	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7805603	0.93[EUR][1000 genomes]
rs9655843	0.91[ASN][1000 genomes]
rs970112	0.90[EUR][1000 genomes]
rs970113	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv607676	chr7:79636682-79687844	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv818527	chr7:79636682-79687844	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607677	chr7:79636682-79693050	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv470344	chr7:79659914-79701003	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv607678	chr7:79665817-79726578	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17803489	GNAI1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79676200-79677200	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr7:79676400-79678000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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