Variant report

Variant	rs28588381
Chromosome Location	chr7:79689374-79689375
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:79689284..79689874-chr7:80021349..80022344,3	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1012825	0.92[ASN][1000 genomes]
rs10215621	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10225175	0.86[EUR][1000 genomes]
rs10228634	0.89[EUR][1000 genomes]
rs10230709	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10250164	0.88[ASN][1000 genomes]
rs10267507	0.85[EUR][1000 genomes]
rs10268785	0.86[EUR][1000 genomes]
rs10270142	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1034699	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1034701	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10954036	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11769881	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11975430	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12154241	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154320	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13437829	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17803489	0.91[ASN][1000 genomes]
rs17804483	0.92[ASN][1000 genomes]
rs2012262	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2040759	0.86[EUR][1000 genomes]
rs28567612	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28601738	0.85[ASN][1000 genomes]
rs28609969	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28698330	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4727999	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4731143	0.88[EUR][1000 genomes]
rs4731144	0.88[EUR][1000 genomes]
rs4731145	0.89[EUR][1000 genomes]
rs4731146	0.89[EUR][1000 genomes]
rs4731202	0.86[ASN][1000 genomes]
rs58785310	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61086456	0.91[ASN][1000 genomes]
rs6466887	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6466904	0.91[ASN][1000 genomes]
rs6466916	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67486586	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6945977	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6966238	0.92[ASN][1000 genomes]
rs7778622	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7783336	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7799402	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9655843	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv607677	chr7:79636682-79693050	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv470344	chr7:79659914-79701003	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607678	chr7:79665817-79726578	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79688800-79689600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr7:79689000-79690000	Enhancers	HUES6 Cell Line	embryonic stem cell

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