Variant report

Variant	rs6466887
Chromosome Location	chr7:79657332-79657333
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10215621	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10225175	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10228634	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10230709	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10267507	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10268785	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10270142	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1034699	0.82[EUR][1000 genomes]
rs1034701	0.82[EUR][1000 genomes]
rs10954036	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11769881	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11975430	0.82[EUR][1000 genomes]
rs12154241	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12154320	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13437829	0.82[EUR][1000 genomes]
rs2040759	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28567612	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28588381	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28609969	0.84[EUR][1000 genomes]
rs28698330	0.84[EUR][1000 genomes]
rs4727999	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4731143	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4731144	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4731145	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4731146	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58785310	0.85[EUR][1000 genomes]
rs6466916	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67486586	0.83[EUR][1000 genomes]
rs6945977	0.87[EUR][1000 genomes]
rs7778622	0.90[EUR][1000 genomes]
rs7783336	0.82[EUR][1000 genomes]
rs7799402	0.82[EUR][1000 genomes]
rs9655843	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv607676	chr7:79636682-79687844	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv818527	chr7:79636682-79687844	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607677	chr7:79636682-79693050	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79656200-79657600	Enhancers	Fetal Heart	heart
2	chr7:79656800-79657600	Enhancers	Hela-S3	cervix
3	chr7:79656800-79662400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr7:79657000-79657400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:79657000-79657400	Enhancers	Fetal Lung	lung
6	chr7:79657000-79657400	Enhancers	NHEK	skin
7	chr7:79657200-79657400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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