Variant report

Variant	rs12154320
Chromosome Location	chr7:79695864-79695865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1012825	0.92[ASN][1000 genomes]
rs10215621	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10225175	0.86[EUR][1000 genomes]
rs10228634	0.87[EUR][1000 genomes]
rs10230709	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10250164	0.88[ASN][1000 genomes]
rs10267507	0.83[EUR][1000 genomes]
rs10268785	0.86[EUR][1000 genomes]
rs10270142	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1034699	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1034701	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10954036	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11769881	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11975430	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12154241	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13437829	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17803489	0.91[ASN][1000 genomes]
rs17804483	0.92[ASN][1000 genomes]
rs2012262	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2040759	0.86[EUR][1000 genomes]
rs28567612	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28588381	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28601738	0.85[ASN][1000 genomes]
rs28609969	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28698330	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4727999	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4731143	0.85[EUR][1000 genomes]
rs4731144	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4731145	0.87[EUR][1000 genomes]
rs4731146	0.87[EUR][1000 genomes]
rs4731202	0.86[ASN][1000 genomes]
rs58785310	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61086456	0.91[ASN][1000 genomes]
rs6466887	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6466904	0.91[ASN][1000 genomes]
rs6466916	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67486586	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6945977	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6966238	0.92[ASN][1000 genomes]
rs7778622	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7783336	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7799402	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9655843	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv470344	chr7:79659914-79701003	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv607678	chr7:79665817-79726578	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1027494	chr7:79693976-79760332	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79690200-79696400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:79695800-79707400	Weak transcription	Psoas Muscle	Psoas

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