Variant report

Variant	rs9655843
Chromosome Location	chr7:79693050-79693051
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1012825	0.92[ASN][1000 genomes]
rs10215621	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10225175	0.85[EUR][1000 genomes]
rs10228634	0.88[EUR][1000 genomes]
rs10230709	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10238400	0.83[CEU][hapmap]
rs10250164	0.88[ASN][1000 genomes]
rs10267507	0.84[EUR][1000 genomes]
rs10268785	0.85[EUR][1000 genomes]
rs10270142	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1034699	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1034701	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10954036	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11769881	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11975430	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12154241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154320	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13437829	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17803489	0.91[ASN][1000 genomes]
rs17804483	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2012262	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2040759	0.85[EUR][1000 genomes]
rs28567612	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28588381	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28601738	0.85[ASN][1000 genomes]
rs28609969	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28698330	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4727999	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4731143	0.87[EUR][1000 genomes]
rs4731144	0.87[EUR][1000 genomes]
rs4731145	0.88[EUR][1000 genomes]
rs4731146	0.88[EUR][1000 genomes]
rs4731202	0.86[ASN][1000 genomes]
rs58785310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61086456	0.91[ASN][1000 genomes]
rs6466887	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6466904	0.91[ASN][1000 genomes]
rs6466916	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67486586	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6945977	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6966238	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7778622	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7783336	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7799402	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv607677	chr7:79636682-79693050	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv470344	chr7:79659914-79701003	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607678	chr7:79665817-79726578	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79690200-79696400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:79692600-79693200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:79692800-79693200	Flanking Active TSS	Adipose Nuclei	Adipose
4	chr7:79692800-79693200	Enhancers	NHLF	lung
5	chr7:79692800-79693200	Active TSS	Osteobl	bone
6	chr7:79692800-79693400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:79693000-79693200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:79693000-79693200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:79693000-79693200	Flanking Active TSS	Fetal Lung	lung
10	chr7:79693000-79693200	Enhancers	Ovary	ovary
11	chr7:79693000-79693400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:79693000-79693400	Active TSS	Fetal Brain Male	brain
13	chr7:79693000-79693400	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr7:79693000-79693400	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links