Variant report
| Variant | rs10267507 |
|---|---|
| Chromosome Location | chr7:79649851-79649852 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10215621 | 0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10225175 | 0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10228634 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10230709 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10268785 | 0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10270142 | 0.88[EUR][1000 genomes] |
| rs10954036 | 0.81[EUR][1000 genomes] |
| rs11769881 | 0.86[EUR][1000 genomes] |
| rs12154241 | 0.84[EUR][1000 genomes] |
| rs12154320 | 0.83[EUR][1000 genomes] |
| rs2040759 | 0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs28567612 | 0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs28588381 | 0.85[EUR][1000 genomes] |
| rs28609969 | 0.82[EUR][1000 genomes] |
| rs28698330 | 0.82[EUR][1000 genomes] |
| rs4727999 | 0.84[EUR][1000 genomes] |
| rs4731143 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4731144 | 0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4731145 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4731146 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs58785310 | 0.85[EUR][1000 genomes] |
| rs6466887 | 0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6466916 | 0.87[EUR][1000 genomes] |
| rs67486586 | 0.82[EUR][1000 genomes] |
| rs6945977 | 0.84[EUR][1000 genomes] |
| rs7778622 | 0.87[EUR][1000 genomes] |
| rs9655843 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv429785 | chr7:79589749-80177049 | Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv607676 | chr7:79636682-79687844 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv818527 | chr7:79636682-79687844 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv607677 | chr7:79636682-79693050 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:79649800-79650400 | Enhancers | HepG2 | liver |
