Variant report

Variant	rs7792379
Chromosome Location	chr7:108071157-108071158
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:108066256..108068604-chr7:108069393..108073824,4	K562	blood:
2	chr7:108069636..108072852-chr7:108078819..108081993,4	MCF-7	breast:
3	chr7:108066612..108068536-chr7:108068946..108071866,2	K562	blood:
4	chr7:108067231..108072750-chr7:108078077..108081806,4	K562	blood:
5	chr7:108067165..108069852-chr7:108070201..108071749,2	MCF-7	breast:
6	chr7:108054248..108057900-chr7:108068091..108071582,3	MCF-7	breast:
7	chr7:108068740..108071373-chr7:108072899..108075610,2	K562	blood:
8	chr7:108069523..108074084-chr7:108075336..108078341,6	MCF-7	breast:
9	chr7:108059629..108061203-chr7:108069537..108072425,2	MCF-7	breast:

No data

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10235291	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10239916	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10240397	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10241916	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10241941	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10264851	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10264905	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10278718	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10280579	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1116335	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1269688	1.00[YRI][hapmap]
rs12705468	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1558037	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1558039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2158849	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2160555	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2395964	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2395996	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2395997	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2395998	0.97[EUR][1000 genomes]
rs2395999	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs4727711	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4730310	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs4730311	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4730312	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4730313	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4730314	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4730315	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4730316	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4730317	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4730319	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6466227	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs6466228	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs6466229	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs6466230	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6466231	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6466232	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs6944286	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6948610	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6973727	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6975183	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7780552	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7782059	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7787736	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7788503	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7799296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9656149	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs970660	0.82[CEU][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108058800-108071200	Weak transcription	Pancreas	Pancrea
2	chr7:108059800-108073400	Weak transcription	Fetal Brain Female	brain
3	chr7:108067400-108071200	Weak transcription	HMEC	breast
4	chr7:108067600-108081000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:108067800-108089400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:108068000-108089400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr7:108069000-108086000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr7:108069200-108071200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr7:108069200-108071200	Weak transcription	HUVEC	blood vessel
10	chr7:108069600-108074400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:108070000-108072200	Genic enhancers	A549	lung
12	chr7:108070200-108072000	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:108070800-108071600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:108070800-108071800	Enhancers	Adipose Nuclei	Adipose
15	chr7:108070800-108074200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr7:108071000-108071400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:108071000-108072000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr7:108071000-108072600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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