Variant report

Variant	rs7799296
Chromosome Location	chr7:108067241-108067242
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:108066488..108068801-chr7:108095390..108097145,2	MCF-7	breast:
2	chr7:108066256..108068604-chr7:108069393..108073824,4	K562	blood:
3	chr7:108067231..108072750-chr7:108078077..108081806,4	K562	blood:
4	chr7:108067165..108069852-chr7:108070201..108071749,2	MCF-7	breast:
5	chr7:108013080..108015754-chr7:108065360..108068339,2	MCF-7	breast:
6	chr7:108066612..108068536-chr7:108068946..108071866,2	K562	blood:
7	chr7:108066199..108068396-chr7:108077458..108079892,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091129	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10235291	0.87[EUR][1000 genomes]
rs10239916	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10240397	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10241916	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10241941	0.97[EUR][1000 genomes]
rs10264851	0.97[EUR][1000 genomes]
rs10264905	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10278718	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10280579	0.97[EUR][1000 genomes]
rs1116335	0.97[EUR][1000 genomes]
rs12705468	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1558037	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1558039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2158849	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2160555	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2395964	0.89[EUR][1000 genomes]
rs2395996	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2395997	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2395998	0.97[EUR][1000 genomes]
rs2395999	0.97[EUR][1000 genomes]
rs4727711	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4730310	0.97[EUR][1000 genomes]
rs4730311	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4730312	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4730313	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4730314	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4730315	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4730316	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4730317	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4730319	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6466227	0.97[EUR][1000 genomes]
rs6466228	0.97[EUR][1000 genomes]
rs6466229	0.97[EUR][1000 genomes]
rs6466230	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6466231	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6466232	0.97[EUR][1000 genomes]
rs6944286	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6948610	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6973727	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6975183	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7780552	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7782059	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7787736	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7788503	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7792379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9656149	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs970660	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108056800-108071000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:108057600-108069000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:108058800-108067400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr7:108058800-108071200	Weak transcription	Pancreas	Pancrea
5	chr7:108059800-108073400	Weak transcription	Fetal Brain Female	brain
6	chr7:108063200-108070400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr7:108064000-108068000	Weak transcription	HUVEC	blood vessel
8	chr7:108065000-108070000	Enhancers	A549	lung
9	chr7:108065000-108071000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr7:108065400-108067400	Enhancers	HMEC	breast
11	chr7:108066400-108068200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:108067000-108067400	Enhancers	Brain Germinal Matrix	brain
13	chr7:108067000-108068000	Enhancers	Brain Cingulate Gyrus	brain
14	chr7:108067000-108069600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:108067000-108071000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr7:108067200-108067600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr7:108067200-108070800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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