Variant report
| Variant | rs7795454 |
|---|---|
| Chromosome Location | chr7:122177347-122177348 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs59716073 | 0.82[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs73433732 | 0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs73433735 | 0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs73433740 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs73433744 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs73433750 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73433754 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73433759 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73433764 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73433769 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73433771 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73433772 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73433778 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73433780 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73433782 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73433784 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73433787 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73433793 | 0.82[AMR][1000 genomes] |
| rs73433800 | 0.82[AMR][1000 genomes] |
| rs73433802 | 0.82[AMR][1000 genomes] |
| rs73435706 | 0.82[AMR][1000 genomes] |
| rs73435725 | 0.82[AMR][1000 genomes] |
| rs73435731 | 0.82[AMR][1000 genomes] |
| rs9918663 | 0.82[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1017029 | chr7:121958574-122338623 | Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:122176600-122177400 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
