Variant report

Variant	rs9918663
Chromosome Location	chr7:122239175-122239176
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:122233367..122235996-chr7:122236414..122239821,3	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10231284	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10248008	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10251826	1.00[JPT][hapmap]
rs10256973	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10258850	1.00[JPT][hapmap]
rs10268918	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10270868	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10272104	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10275217	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10277048	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10277691	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10487750	1.00[JPT][hapmap]
rs10493126	1.00[JPT][hapmap]
rs10953961	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11760643	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11767048	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12534868	1.00[JPT][hapmap]
rs12538235	1.00[JPT][hapmap]
rs12706423	1.00[JPT][hapmap]
rs12706437	1.00[JPT][hapmap]
rs12706438	1.00[JPT][hapmap]
rs12706439	1.00[JPT][hapmap]
rs12706440	1.00[JPT][hapmap]
rs12706441	1.00[JPT][hapmap]
rs12706442	1.00[JPT][hapmap]
rs12706443	1.00[JPT][hapmap]
rs12706444	1.00[JPT][hapmap]
rs12706445	1.00[JPT][hapmap]
rs13224552	1.00[JPT][hapmap]
rs13227529	1.00[JPT][hapmap]
rs13232111	1.00[JPT][hapmap]
rs13233385	1.00[JPT][hapmap]
rs13235728	1.00[JPT][hapmap]
rs13239193	1.00[JPT][hapmap]
rs13239280	1.00[JPT][hapmap]
rs17144796	1.00[JPT][hapmap]
rs17144817	1.00[JPT][hapmap]
rs17144859	1.00[JPT][hapmap]
rs17144881	1.00[JPT][hapmap]
rs2190252	1.00[JPT][hapmap]
rs2190253	1.00[JPT][hapmap]
rs2190259	1.00[JPT][hapmap]
rs4131663	1.00[CHB][hapmap]
rs59716073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6947220	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6947805	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6951877	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6956554	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6959220	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6963383	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs73433740	0.82[AMR][1000 genomes]
rs73433744	0.82[AMR][1000 genomes]
rs73433750	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73433754	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73433759	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73433764	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73433769	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73433771	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73433772	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73433778	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73433780	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433782	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433784	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433787	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73433797	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73433800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73433802	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73435706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73435725	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73435731	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7781627	0.82[CHB][hapmap]
rs7782606	1.00[JPT][hapmap]
rs7795454	0.82[AMR][1000 genomes]
rs987227	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122217600-122265600	Weak transcription	Aorta	Aorta
2	chr7:122231200-122246200	Weak transcription	Left Ventricle	heart
3	chr7:122237600-122258800	Weak transcription	Pancreas	Pancrea
4	chr7:122238000-122257200	Weak transcription	Fetal Lung	lung
5	chr7:122238800-122239400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:122239000-122239400	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell

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