Variant report

Variant	rs7781627
Chromosome Location	chr7:122199316-122199317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1010498	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10266303	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10953961	0.82[CHB][hapmap]
rs11760643	0.82[CHB][hapmap]
rs11763594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11767048	0.82[CHB][hapmap]
rs12706423	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12706424	0.91[ASN][1000 genomes]
rs13222290	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13222449	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13236662	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17144588	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1990350	0.89[ASN][1000 genomes]
rs2430043	1.00[JPT][hapmap]
rs28514506	0.82[EUR][1000 genomes]
rs28565406	0.91[ASN][1000 genomes]
rs28671172	0.93[ASN][1000 genomes]
rs34009656	0.89[ASN][1000 genomes]
rs34208874	0.91[ASN][1000 genomes]
rs35131640	0.91[ASN][1000 genomes]
rs35147547	0.89[ASN][1000 genomes]
rs35345335	0.91[ASN][1000 genomes]
rs35778660	0.91[ASN][1000 genomes]
rs4131663	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs4301386	1.00[JPT][hapmap]
rs4521704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4604372	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs55913030	0.81[ASN][1000 genomes]
rs6466825	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6944494	0.91[ASN][1000 genomes]
rs6952217	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6954625	0.91[ASN][1000 genomes]
rs6956116	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs6959395	0.91[ASN][1000 genomes]
rs6962479	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6962798	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6964649	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7782215	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7791524	0.91[ASN][1000 genomes]
rs7808115	0.91[ASN][1000 genomes]
rs7809699	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7810271	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9918663	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122184400-122226000	Weak transcription	Left Ventricle	heart
2	chr7:122193200-122219200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:122197400-122202200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:122197600-122202200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:122197800-122218600	Weak transcription	Lung	lung
6	chr7:122198000-122200000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr7:122198000-122229000	Weak transcription	Fetal Lung	lung

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