Variant report

Variant	rs11763594
Chromosome Location	chr7:122186753-122186754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1010498	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10266303	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12706423	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12706424	0.87[ASN][1000 genomes]
rs13222290	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13222449	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13236662	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17144588	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1990350	0.85[ASN][1000 genomes]
rs2430043	1.00[JPT][hapmap]
rs28514506	0.86[EUR][1000 genomes]
rs28565406	0.87[ASN][1000 genomes]
rs28671172	0.89[ASN][1000 genomes]
rs34009656	0.85[ASN][1000 genomes]
rs34208874	0.87[ASN][1000 genomes]
rs35131640	0.87[ASN][1000 genomes]
rs35147547	0.85[ASN][1000 genomes]
rs35345335	0.87[ASN][1000 genomes]
rs35778660	0.87[ASN][1000 genomes]
rs4131663	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs4301386	1.00[JPT][hapmap]
rs4521704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4604372	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[ASN][1000 genomes]
rs6466825	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6944494	0.87[ASN][1000 genomes]
rs6952217	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6954625	0.87[ASN][1000 genomes]
rs6956116	0.92[CEU][hapmap]
rs6959395	0.87[ASN][1000 genomes]
rs6962479	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6962798	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6964649	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7781627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7782215	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7791524	0.87[ASN][1000 genomes]
rs7808115	0.87[ASN][1000 genomes]
rs7809699	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7810271	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3326794	chr7:122186590-122196256	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122183200-122192400	Weak transcription	Fetal Lung	lung
2	chr7:122184400-122226000	Weak transcription	Left Ventricle	heart
3	chr7:122184600-122197400	Weak transcription	Lung	lung
4	chr7:122184800-122186800	Weak transcription	Ovary	ovary
5	chr7:122184800-122197200	Weak transcription	Pancreas	Pancrea

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