Variant report

Variant	rs4521704
Chromosome Location	chr7:122246992-122246993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1010498	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10251826	1.00[JPT][hapmap]
rs10258850	1.00[JPT][hapmap]
rs10266303	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.96[ASN][1000 genomes]
rs11763594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12706423	1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12706424	0.98[ASN][1000 genomes]
rs13222290	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13222449	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13236662	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17144588	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs1990350	0.92[ASN][1000 genomes]
rs28565406	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs28671172	0.96[ASN][1000 genomes]
rs34009656	0.96[ASN][1000 genomes]
rs34208874	0.98[ASN][1000 genomes]
rs35131640	0.98[ASN][1000 genomes]
rs35147547	0.92[ASN][1000 genomes]
rs35345335	0.98[ASN][1000 genomes]
rs35778660	0.98[ASN][1000 genomes]
rs4131663	1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs4301386	1.00[JPT][hapmap]
rs4604372	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs55913030	0.87[ASN][1000 genomes]
rs6466821	0.82[CEU][hapmap]
rs6466825	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6944494	0.98[ASN][1000 genomes]
rs6952217	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6954625	0.98[ASN][1000 genomes]
rs6956116	0.92[CEU][hapmap];0.88[CHD][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes]
rs6959395	0.98[ASN][1000 genomes]
rs6962479	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6962798	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6964649	0.88[ASW][hapmap];1.00[CEU][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7781627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7782215	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs7791524	0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7808115	0.98[ASN][1000 genomes]
rs7809699	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7810271	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4521704	C7orf58	cis	parietal	SCAN
rs4521704	TAS2R16	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122217600-122265600	Weak transcription	Aorta	Aorta
2	chr7:122237600-122258800	Weak transcription	Pancreas	Pancrea
3	chr7:122238000-122257200	Weak transcription	Fetal Lung	lung
4	chr7:122240400-122256200	Weak transcription	Liver	Liver
5	chr7:122245000-122254800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:122246000-122248400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr7:122246800-122254000	Weak transcription	Left Ventricle	heart

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