Variant report

Variant	rs55913030
Chromosome Location	chr7:122231489-122231490
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1010498	0.81[ASN][1000 genomes]
rs10266303	0.82[ASN][1000 genomes]
rs12706423	0.85[ASN][1000 genomes]
rs12706424	0.85[ASN][1000 genomes]
rs13222290	0.85[ASN][1000 genomes]
rs13222449	0.85[ASN][1000 genomes]
rs13236662	0.81[ASN][1000 genomes]
rs28565406	0.85[ASN][1000 genomes]
rs28671172	0.82[ASN][1000 genomes]
rs34009656	0.82[ASN][1000 genomes]
rs34208874	0.85[ASN][1000 genomes]
rs35131640	0.85[ASN][1000 genomes]
rs35345335	0.85[ASN][1000 genomes]
rs35778660	0.85[ASN][1000 genomes]
rs4131663	0.85[ASN][1000 genomes]
rs4521704	0.87[ASN][1000 genomes]
rs4604372	0.85[ASN][1000 genomes]
rs6466825	0.85[ASN][1000 genomes]
rs6944494	0.85[ASN][1000 genomes]
rs6952217	0.81[ASN][1000 genomes]
rs6954625	0.85[ASN][1000 genomes]
rs6959395	0.85[ASN][1000 genomes]
rs6962479	0.87[ASN][1000 genomes]
rs6964649	0.81[ASN][1000 genomes]
rs7781627	0.81[ASN][1000 genomes]
rs7782215	0.82[ASN][1000 genomes]
rs7791524	0.85[ASN][1000 genomes]
rs7808115	0.85[ASN][1000 genomes]
rs7809699	0.85[ASN][1000 genomes]
rs7810271	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122217600-122265600	Weak transcription	Aorta	Aorta
2	chr7:122231200-122246200	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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