Variant report

Variant	rs28514506
Chromosome Location	chr7:122163040-122163041
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1010498	0.82[EUR][1000 genomes]
rs10155830	0.91[ASN][1000 genomes]
rs10226496	0.91[ASN][1000 genomes]
rs11763594	0.86[EUR][1000 genomes]
rs12706419	0.97[ASN][1000 genomes]
rs12706421	0.88[ASN][1000 genomes]
rs13222290	0.82[EUR][1000 genomes]
rs13222449	0.82[EUR][1000 genomes]
rs13226509	0.91[ASN][1000 genomes]
rs13236662	0.82[EUR][1000 genomes]
rs13237014	0.91[ASN][1000 genomes]
rs13246063	0.91[ASN][1000 genomes]
rs17144525	0.97[ASN][1000 genomes]
rs17144531	0.97[ASN][1000 genomes]
rs17144538	0.91[ASN][1000 genomes]
rs2402617	0.91[ASN][1000 genomes]
rs28379593	0.91[ASN][1000 genomes]
rs34279868	0.91[ASN][1000 genomes]
rs34283322	0.97[ASN][1000 genomes]
rs35132220	0.97[ASN][1000 genomes]
rs35248522	0.91[ASN][1000 genomes]
rs35380309	0.91[ASN][1000 genomes]
rs35462947	0.88[ASN][1000 genomes]
rs35998200	0.91[ASN][1000 genomes]
rs4301386	0.88[ASN][1000 genomes]
rs4363139	0.88[ASN][1000 genomes]
rs60253193	0.88[ASN][1000 genomes]
rs6952217	0.82[EUR][1000 genomes]
rs6956116	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6963465	0.91[ASN][1000 genomes]
rs6964649	0.83[EUR][1000 genomes]
rs6974720	0.88[ASN][1000 genomes]
rs71573102	0.97[ASN][1000 genomes]
rs71574706	0.88[ASN][1000 genomes]
rs71574707	0.88[ASN][1000 genomes]
rs73717670	0.97[ASN][1000 genomes]
rs7781627	0.82[EUR][1000 genomes]
rs7782223	0.91[ASN][1000 genomes]
rs7798979	0.97[ASN][1000 genomes]
rs7809992	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122155800-122171000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:122160400-122170800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:122162000-122163800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:122162200-122163800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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