Variant report

Variant	rs11767048
Chromosome Location	chr7:122230549-122230550
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1010496	0.86[CEU][hapmap];0.90[EUR][1000 genomes]
rs10231284	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10239784	0.81[EUR][1000 genomes]
rs10248008	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10251826	1.00[JPT][hapmap]
rs10256973	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10258850	1.00[JPT][hapmap]
rs10268918	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10270868	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10272104	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10275217	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10277048	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10277691	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10487229	0.86[CEU][hapmap];0.90[EUR][1000 genomes]
rs10953961	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11760643	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11767257	0.83[EUR][1000 genomes]
rs11767400	0.82[CEU][hapmap]
rs11769723	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs11770993	0.90[EUR][1000 genomes]
rs12706423	1.00[JPT][hapmap]
rs17144796	1.00[JPT][hapmap]
rs17381160	0.86[CEU][hapmap]
rs17381305	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs17381596	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs17381814	0.90[EUR][1000 genomes]
rs17381835	0.88[EUR][1000 genomes]
rs17465881	0.81[CEU][hapmap]
rs17465937	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs4131663	1.00[CHB][hapmap]
rs59716073	0.94[ASN][1000 genomes]
rs6466821	0.86[CEU][hapmap];0.90[EUR][1000 genomes]
rs6947220	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6947805	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6951877	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6956554	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6959220	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6963383	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs73433750	0.82[ASN][1000 genomes]
rs73433754	0.82[ASN][1000 genomes]
rs73433759	0.82[ASN][1000 genomes]
rs73433764	0.82[ASN][1000 genomes]
rs73433769	0.82[ASN][1000 genomes]
rs73433771	0.82[ASN][1000 genomes]
rs73433772	0.82[ASN][1000 genomes]
rs73433778	0.88[ASN][1000 genomes]
rs73433780	0.94[ASN][1000 genomes]
rs73433782	0.94[ASN][1000 genomes]
rs73433784	0.94[ASN][1000 genomes]
rs73433787	0.94[ASN][1000 genomes]
rs73433793	0.94[ASN][1000 genomes]
rs73433797	0.94[ASN][1000 genomes]
rs73433800	0.83[ASN][1000 genomes]
rs73433802	0.94[ASN][1000 genomes]
rs73435706	0.94[ASN][1000 genomes]
rs73435725	0.94[ASN][1000 genomes]
rs73435731	0.94[ASN][1000 genomes]
rs7781627	0.82[CHB][hapmap]
rs7790115	0.80[CEU][hapmap];0.83[EUR][1000 genomes]
rs7804719	0.86[CEU][hapmap]
rs987227	1.00[JPT][hapmap]
rs9918663	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122217600-122265600	Weak transcription	Aorta	Aorta

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