Variant report

Variant	rs10272104
Chromosome Location	chr7:122091008-122091009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10231284	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10241493	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10248008	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10251826	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10256973	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10258850	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10266852	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10268918	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10270700	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10270868	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10275217	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277048	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277691	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10953961	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11760643	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11767048	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12706423	1.00[JPT][hapmap]
rs28380284	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28538086	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28555167	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28648607	1.00[ASN][1000 genomes]
rs28648932	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28684792	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28712478	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28735372	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57057655	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57454175	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57818732	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58891896	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60821982	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61588302	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6947220	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6947805	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6948337	0.85[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6949798	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6949994	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6951877	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6956554	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6959220	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6963383	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6970658	0.91[ASN][1000 genomes]
rs6979694	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431526	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431531	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431535	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431538	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431539	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431544	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431546	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431563	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431568	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431574	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431579	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431588	0.91[ASN][1000 genomes]
rs73431590	0.91[ASN][1000 genomes]
rs73431597	0.91[ASN][1000 genomes]
rs73431600	0.81[ASN][1000 genomes]
rs73431602	0.81[ASN][1000 genomes]
rs73433705	0.81[ASN][1000 genomes]
rs73433724	0.81[ASN][1000 genomes]
rs73444460	0.81[ASN][1000 genomes]
rs9918663	0.82[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122022400-122095000	Weak transcription	Gastric	stomach
2	chr7:122047000-122155400	Weak transcription	Left Ventricle	heart
3	chr7:122056200-122122200	Weak transcription	Liver	Liver
4	chr7:122061200-122095200	Weak transcription	Aorta	Aorta
5	chr7:122084600-122095600	Weak transcription	Fetal Lung	lung
6	chr7:122084800-122118600	Weak transcription	Lung	lung
7	chr7:122086600-122092000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr7:122087600-122107600	Weak transcription	Fetal Intestine Small	intestine
9	chr7:122088200-122091200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr7:122088200-122091400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr7:122088200-122093400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr7:122088600-122091200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr7:122088600-122091400	Enhancers	H9 Cell Line	embryonic stem cell
14	chr7:122089000-122091800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr7:122089000-122110400	Weak transcription	HepG2	liver
16	chr7:122089400-122091800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:122089400-122092400	Weak transcription	Adipose Nuclei	Adipose
18	chr7:122089600-122092200	Weak transcription	Right Ventricle	heart
19	chr7:122089800-122092200	Weak transcription	Fetal Heart	heart
20	chr7:122090000-122092400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr7:122090000-122092400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr7:122090400-122091200	Enhancers	H1 Cell Line	embryonic stem cell
23	chr7:122090600-122091200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:122090600-122091200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr7:122090600-122091200	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr7:122090600-122091400	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr7:122090600-122091400	Strong transcription	Pancreas	Pancrea
28	chr7:122090800-122091400	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr7:122090800-122091400	Strong transcription	Ovary	ovary
30	chr7:122090800-122091400	Strong transcription	Placenta Amnion	Placenta Amnion
31	chr7:122091000-122091200	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr7:122091000-122091200	Active TSS	Sigmoid Colon	Sigmoid Colon

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