Variant report

Variant	rs6951877
Chromosome Location	chr7:122057400-122057401
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10231284	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10241493	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10248008	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10251826	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10256973	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10258850	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10266852	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10268918	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10270700	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10270868	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10272104	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10275217	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277048	0.92[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277588	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277691	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11767048	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11973627	0.92[ASW][hapmap];0.81[LWK][hapmap];0.82[AFR][1000 genomes]
rs12706423	1.00[JPT][hapmap]
rs28380284	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28538086	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28555167	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28648607	1.00[ASN][1000 genomes]
rs28648932	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28684792	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28712478	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28735372	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57057655	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57454175	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57818732	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58891896	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60821982	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61588302	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6947220	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6947805	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6948337	0.85[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6949798	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6949994	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6956554	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6959220	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6963383	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[ASN][1000 genomes]
rs6970658	0.91[ASN][1000 genomes]
rs6979694	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431526	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431531	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431532	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431535	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431538	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431539	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431544	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431546	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431553	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431563	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431568	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431574	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431579	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431588	0.91[ASN][1000 genomes]
rs73431590	0.91[ASN][1000 genomes]
rs73431597	0.91[ASN][1000 genomes]
rs73431600	0.81[ASN][1000 genomes]
rs73431602	0.81[ASN][1000 genomes]
rs73433705	0.81[ASN][1000 genomes]
rs73433724	0.81[ASN][1000 genomes]
rs73444460	0.81[ASN][1000 genomes]
rs9918663	0.82[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6951877	FERMT1	trans	lymphoblastoid	seeQTL
rs6951877	GPR125	trans	lymphoblastoid	seeQTL

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122003200-122061000	Weak transcription	Aorta	Aorta
2	chr7:122007400-122073000	Weak transcription	Lung	lung
3	chr7:122013800-122081800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr7:122022400-122095000	Weak transcription	Gastric	stomach
5	chr7:122033600-122061000	Weak transcription	Pancreas	Pancrea
6	chr7:122040600-122057800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr7:122045800-122063200	Weak transcription	Ovary	ovary
8	chr7:122047000-122155400	Weak transcription	Left Ventricle	heart
9	chr7:122053000-122059800	Weak transcription	Right Atrium	heart
10	chr7:122053800-122057400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:122054800-122057800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:122055000-122057800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:122055400-122057600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr7:122055800-122071200	Weak transcription	Fetal Lung	lung
15	chr7:122056000-122058000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr7:122056200-122122200	Weak transcription	Liver	Liver
17	chr7:122056400-122057600	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr7:122056400-122057800	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr7:122056600-122069600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:122056800-122057400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:122057000-122071000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:122057400-122057600	Enhancers	H9 Cell Line	embryonic stem cell

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