Variant report

Variant	rs10256973
Chromosome Location	chr7:122149225-122149226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10231284	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10235626	0.85[CEU][hapmap]
rs10238269	0.82[CEU][hapmap]
rs10246078	0.85[CEU][hapmap]
rs10248008	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10251826	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10258850	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10264820	0.85[CEU][hapmap]
rs10266852	0.81[ASN][1000 genomes]
rs10268918	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10269374	0.85[CEU][hapmap]
rs10270700	0.81[ASN][1000 genomes]
rs10270868	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10272104	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10275217	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10277048	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10277588	0.81[ASN][1000 genomes]
rs10277691	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10953961	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11760643	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11767048	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12706410	0.85[CEU][hapmap]
rs12706412	0.82[CEU][hapmap]
rs12706423	1.00[JPT][hapmap]
rs13222975	0.85[CEU][hapmap]
rs13238360	0.85[CEU][hapmap]
rs17380636	0.85[CEU][hapmap]
rs17463779	0.85[CEU][hapmap]
rs17463849	0.85[CEU][hapmap]
rs28380284	0.81[ASN][1000 genomes]
rs28538086	0.81[ASN][1000 genomes]
rs28555167	0.81[ASN][1000 genomes]
rs28648607	0.81[ASN][1000 genomes]
rs28648932	0.81[ASN][1000 genomes]
rs28684792	0.81[ASN][1000 genomes]
rs28712478	0.81[ASN][1000 genomes]
rs28735372	0.81[ASN][1000 genomes]
rs57057655	0.81[ASN][1000 genomes]
rs57454175	0.81[ASN][1000 genomes]
rs57818732	0.81[ASN][1000 genomes]
rs58891896	0.81[ASN][1000 genomes]
rs60821982	0.81[ASN][1000 genomes]
rs61588302	0.81[ASN][1000 genomes]
rs6947220	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6947805	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6948337	0.85[CHB][hapmap];1.00[CHD][hapmap];0.81[ASN][1000 genomes]
rs6949798	0.81[ASN][1000 genomes]
rs6949994	0.81[ASN][1000 genomes]
rs6951877	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6955734	0.85[CEU][hapmap]
rs6956554	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6959220	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6963383	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6970658	0.91[ASN][1000 genomes]
rs6979694	0.81[ASN][1000 genomes]
rs6980172	0.85[CEU][hapmap]
rs73431526	0.81[ASN][1000 genomes]
rs73431531	0.81[ASN][1000 genomes]
rs73431532	0.81[ASN][1000 genomes]
rs73431535	0.81[ASN][1000 genomes]
rs73431538	0.81[ASN][1000 genomes]
rs73431539	0.81[ASN][1000 genomes]
rs73431544	0.81[ASN][1000 genomes]
rs73431546	0.81[ASN][1000 genomes]
rs73431553	0.81[ASN][1000 genomes]
rs73431563	0.81[ASN][1000 genomes]
rs73431568	0.81[ASN][1000 genomes]
rs73431574	0.81[ASN][1000 genomes]
rs73431579	0.81[ASN][1000 genomes]
rs73431588	0.91[ASN][1000 genomes]
rs73431590	0.91[ASN][1000 genomes]
rs73431597	0.91[ASN][1000 genomes]
rs73431600	1.00[ASN][1000 genomes]
rs73431602	1.00[ASN][1000 genomes]
rs73433705	1.00[ASN][1000 genomes]
rs73433724	1.00[ASN][1000 genomes]
rs9918663	0.82[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10256973	SNX7	trans	lymphoblastoid	seeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122047000-122155400	Weak transcription	Left Ventricle	heart
2	chr7:122138200-122155400	Weak transcription	Gastric	stomach
3	chr7:122140200-122159000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:122146200-122155400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:122146200-122155600	Weak transcription	Pancreas	Pancrea
6	chr7:122147600-122153800	Weak transcription	Fetal Lung	lung

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