Variant report

Variant	rs6980172
Chromosome Location	chr7:122151074-122151075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10229609	0.87[YRI][hapmap]
rs10235626	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10238269	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10239128	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10246078	1.00[CEU][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10253515	1.00[YRI][hapmap]
rs10256973	0.85[CEU][hapmap]
rs10258166	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10258309	1.00[YRI][hapmap]
rs10258422	0.87[YRI][hapmap]
rs10259052	0.87[YRI][hapmap]
rs10264820	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10269374	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10269606	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10270544	0.87[YRI][hapmap];0.87[AFR][1000 genomes]
rs10271472	1.00[YRI][hapmap]
rs10441358	0.87[YRI][hapmap]
rs11973627	0.85[CEU][hapmap]
rs11974367	0.87[YRI][hapmap]
rs11984390	0.85[CEU][hapmap]
rs12706410	1.00[CEU][hapmap]
rs12706412	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12706413	0.85[CEU][hapmap]
rs12706415	0.85[CEU][hapmap];0.87[YRI][hapmap];0.82[AMR][1000 genomes]
rs13222975	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13231250	0.92[EUR][1000 genomes]
rs13238360	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13239116	0.82[AMR][1000 genomes]
rs13241783	0.85[CEU][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17380636	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17463779	1.00[CEU][hapmap]
rs17463849	1.00[CEU][hapmap]
rs28390321	1.00[AFR][1000 genomes]
rs28406245	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs28416120	1.00[AFR][1000 genomes]
rs28487917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28492775	0.82[AMR][1000 genomes]
rs28522818	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28729738	0.87[AFR][1000 genomes]
rs34133916	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34427116	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35337102	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35866765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6947220	1.00[CEU][hapmap]
rs6947978	0.85[YRI][hapmap]
rs6949079	0.83[YRI][hapmap]
rs6952265	0.87[YRI][hapmap]
rs6954982	0.87[YRI][hapmap]
rs6955734	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9656294	0.85[CEU][hapmap];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122047000-122155400	Weak transcription	Left Ventricle	heart
2	chr7:122138200-122155400	Weak transcription	Gastric	stomach
3	chr7:122140200-122159000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:122146200-122155400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:122146200-122155600	Weak transcription	Pancreas	Pancrea
6	chr7:122147600-122153800	Weak transcription	Fetal Lung	lung
7	chr7:122149600-122154600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr7:122150600-122151200	Enhancers	HUES48 Cell Line	embryonic stem cell

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