Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10229609	1.00[YRI][hapmap]
rs10235626	0.87[YRI][hapmap]
rs10238269	0.87[YRI][hapmap]
rs10253515	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10258166	0.87[YRI][hapmap]
rs10258309	0.87[YRI][hapmap]
rs10258422	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs10259052	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10269952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10271472	0.87[YRI][hapmap]
rs10275211	0.82[AFR][1000 genomes]
rs10281006	1.00[YRI][hapmap]
rs11974367	1.00[YRI][hapmap]
rs11974506	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17380636	0.87[YRI][hapmap]
rs28393630	1.00[AMR][1000 genomes]
rs28408353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28450014	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6947978	1.00[YRI][hapmap]
rs6949079	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6952265	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6954982	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs6960107	0.82[AFR][1000 genomes]
rs6980172	0.87[YRI][hapmap]
rs73218218	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be: