Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10229609	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10235626	0.85[YRI][hapmap]
rs10238269	0.85[YRI][hapmap]
rs10246699	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10253515	1.00[YRI][hapmap]
rs10256514	1.00[AMR][1000 genomes]
rs10258166	0.85[YRI][hapmap]
rs10258309	0.85[YRI][hapmap]
rs10258422	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10259052	1.00[YRI][hapmap]
rs10271472	0.85[YRI][hapmap]
rs10275211	1.00[AMR][1000 genomes]
rs10281006	1.00[YRI][hapmap]
rs10441358	1.00[YRI][hapmap]
rs11974367	1.00[YRI][hapmap]
rs17380636	0.85[YRI][hapmap]
rs6949079	1.00[YRI][hapmap]
rs6952265	1.00[YRI][hapmap]
rs6954982	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6972775	1.00[AMR][1000 genomes]
rs6980172	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3326794	chr7:122186590-122196256	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122184400-122226000	Weak transcription	Left Ventricle	heart
2	chr7:122184600-122197400	Weak transcription	Lung	lung
3	chr7:122184800-122197200	Weak transcription	Pancreas	Pancrea
4	chr7:122189000-122196600	Weak transcription	Colon Smooth Muscle	Colon
5	chr7:122192600-122196800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr7:122192800-122196600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr7:122193200-122219200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr7:122194200-122197000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:122194200-122197200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:122194400-122196600	Weak transcription	Fetal Lung	lung

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