Variant report

No.	Distal block	Cell Line	Cell type
1	chr7:121732772..121733674-chr7:122172559..122173937,5	MCF-7	breast:
2	chr7:121653397..121655198-chr7:122171537..122173372,2	MCF-7	breast:
3	chr7:121859014..121859979-chr7:122172471..122173393,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10229609	1.00[YRI][hapmap]
rs10235626	1.00[YRI][hapmap]
rs10238269	1.00[YRI][hapmap]
rs10258166	1.00[YRI][hapmap]
rs10258309	1.00[YRI][hapmap]
rs10258422	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs10259052	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10269952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10270544	0.85[YRI][hapmap]
rs10271472	1.00[YRI][hapmap]
rs10275211	0.82[AFR][1000 genomes]
rs10281006	1.00[YRI][hapmap]
rs10441358	1.00[YRI][hapmap]
rs11974367	1.00[YRI][hapmap]
rs11974506	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12706415	0.85[YRI][hapmap]
rs13241783	0.85[YRI][hapmap]
rs17380636	1.00[YRI][hapmap]
rs28393630	1.00[AMR][1000 genomes]
rs28408353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28450014	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6947978	1.00[YRI][hapmap]
rs6949079	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6952265	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6954982	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs6960107	0.82[AFR][1000 genomes]
rs6980172	1.00[YRI][hapmap]
rs73218218	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122171000-122173200	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr7:122171200-122173000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:122172400-122176600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr7:122172600-122173000	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr7:122172600-122173000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr7:122172600-122173000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr7:122172600-122173000	Active TSS	iPS-20b Cell Line	embryonic stem cell

Quick Search: