Variant report

Variant	rs10270544
Chromosome Location	chr7:122104822-122104823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10235626	0.87[YRI][hapmap];0.87[AFR][1000 genomes]
rs10238269	0.87[YRI][hapmap]
rs10253515	0.85[YRI][hapmap]
rs10258166	0.87[YRI][hapmap];0.87[AFR][1000 genomes]
rs10258309	0.87[YRI][hapmap]
rs10271472	0.87[YRI][hapmap]
rs12706415	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs13239116	0.84[AFR][1000 genomes]
rs13241783	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17380636	0.87[YRI][hapmap]
rs28390321	0.87[AFR][1000 genomes]
rs28406245	1.00[AFR][1000 genomes]
rs28416120	0.87[AFR][1000 genomes]
rs28487917	0.87[AFR][1000 genomes]
rs28492775	0.84[AFR][1000 genomes]
rs28729738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35866765	0.87[AFR][1000 genomes]
rs6949079	0.83[YRI][hapmap]
rs6980172	0.87[YRI][hapmap];0.87[AFR][1000 genomes]
rs9656294	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122047000-122155400	Weak transcription	Left Ventricle	heart
2	chr7:122056200-122122200	Weak transcription	Liver	Liver
3	chr7:122084800-122118600	Weak transcription	Lung	lung
4	chr7:122087600-122107600	Weak transcription	Fetal Intestine Small	intestine
5	chr7:122089000-122110400	Weak transcription	HepG2	liver
6	chr7:122091400-122113000	Weak transcription	Pancreas	Pancrea
7	chr7:122091400-122130200	Weak transcription	Ovary	ovary
8	chr7:122091400-122132800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr7:122095400-122111400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:122098400-122108800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr7:122098400-122114400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr7:122098800-122108200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr7:122104200-122108600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr7:122104400-122108600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr7:122104600-122110800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr7:122104800-122123400	Weak transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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