Variant report

Variant	rs28416120
Chromosome Location	chr7:122131964-122131965
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10235626	1.00[AFR][1000 genomes]
rs10246078	0.87[AFR][1000 genomes]
rs10258166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10270544	0.87[AFR][1000 genomes]
rs13241783	0.87[AFR][1000 genomes]
rs17380636	0.84[AFR][1000 genomes]
rs28390321	1.00[AFR][1000 genomes]
rs28406245	0.87[AFR][1000 genomes]
rs28487917	1.00[AFR][1000 genomes]
rs28522818	0.84[AFR][1000 genomes]
rs28729738	0.87[AFR][1000 genomes]
rs34133916	0.84[AFR][1000 genomes]
rs35866765	1.00[AFR][1000 genomes]
rs6980172	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122047000-122155400	Weak transcription	Left Ventricle	heart
2	chr7:122091400-122132800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:122115400-122140000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:122122800-122132200	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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