Variant report

Variant	rs34133916
Chromosome Location	chr7:122112665-122112666
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10235626	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10238269	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10239128	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10246078	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10258166	0.84[AFR][1000 genomes]
rs10264820	0.88[EUR][1000 genomes]
rs10269374	0.88[EUR][1000 genomes]
rs10269606	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11973627	0.86[EUR][1000 genomes]
rs11984390	0.80[EUR][1000 genomes]
rs12706410	0.86[EUR][1000 genomes]
rs12706411	0.84[EUR][1000 genomes]
rs12706412	0.88[EUR][1000 genomes]
rs12706415	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs13222975	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13231250	1.00[EUR][1000 genomes]
rs13238360	0.92[EUR][1000 genomes]
rs13239116	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs13241783	0.82[AMR][1000 genomes]
rs17380636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17463779	0.86[EUR][1000 genomes]
rs17463849	0.86[EUR][1000 genomes]
rs28390321	0.84[AFR][1000 genomes]
rs28406245	0.82[AMR][1000 genomes]
rs28416120	0.84[AFR][1000 genomes]
rs28487917	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28492775	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs28522818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34252702	0.86[EUR][1000 genomes]
rs34427116	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35090045	0.82[EUR][1000 genomes]
rs35168749	0.86[EUR][1000 genomes]
rs35337102	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35636140	0.86[EUR][1000 genomes]
rs35760934	0.82[EUR][1000 genomes]
rs35866765	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6955734	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6980172	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71571077	0.86[EUR][1000 genomes]
rs71573096	0.86[EUR][1000 genomes]
rs9656294	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122047000-122155400	Weak transcription	Left Ventricle	heart
2	chr7:122056200-122122200	Weak transcription	Liver	Liver
3	chr7:122084800-122118600	Weak transcription	Lung	lung
4	chr7:122091400-122113000	Weak transcription	Pancreas	Pancrea
5	chr7:122091400-122130200	Weak transcription	Ovary	ovary
6	chr7:122091400-122132800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr7:122098400-122114400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:122104800-122123400	Weak transcription	Fetal Stomach	stomach
9	chr7:122110600-122115400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr7:122110600-122115400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr7:122111400-122115600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr7:122111600-122113600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:122111600-122113800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr7:122111600-122113800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:122111800-122113600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:122111800-122113600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr7:122111800-122113600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr7:122111800-122113800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:122111800-122114000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr7:122112400-122113800	Weak transcription	H1 Cell Line	embryonic stem cell

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