Variant report

Variant	rs13238360
Chromosome Location	chr7:122121194-122121195
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10235626	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10238269	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10239128	0.92[EUR][1000 genomes]
rs10246078	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10256973	0.85[CEU][hapmap]
rs10264820	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10269374	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10269606	1.00[EUR][1000 genomes]
rs11973627	0.85[CEU][hapmap]
rs11983718	1.00[CHB][hapmap]
rs11984390	0.85[CEU][hapmap]
rs12706410	1.00[CEU][hapmap];0.89[AMR][1000 genomes]
rs12706411	0.89[AMR][1000 genomes]
rs12706412	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12706413	0.85[CEU][hapmap];0.89[AMR][1000 genomes]
rs12706415	0.85[CEU][hapmap]
rs12706425	0.87[AMR][1000 genomes]
rs13222975	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13231250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13241783	0.85[CEU][hapmap]
rs17380636	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17463779	1.00[CEU][hapmap]
rs17463849	1.00[CEU][hapmap]
rs28487917	1.00[EUR][1000 genomes]
rs28522818	1.00[EUR][1000 genomes]
rs34133916	0.92[EUR][1000 genomes]
rs34427116	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34565849	0.89[AMR][1000 genomes]
rs35090045	0.89[AMR][1000 genomes]
rs35337102	1.00[EUR][1000 genomes]
rs35604970	0.87[AMR][1000 genomes]
rs35710523	0.89[AMR][1000 genomes]
rs35760934	0.89[AMR][1000 genomes]
rs35866765	1.00[EUR][1000 genomes]
rs35967022	0.87[AMR][1000 genomes]
rs6947220	1.00[CEU][hapmap]
rs6955734	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6980172	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9656294	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122047000-122155400	Weak transcription	Left Ventricle	heart
2	chr7:122056200-122122200	Weak transcription	Liver	Liver
3	chr7:122091400-122130200	Weak transcription	Ovary	ovary
4	chr7:122091400-122132800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr7:122104800-122123400	Weak transcription	Fetal Stomach	stomach
6	chr7:122115400-122140000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:122118200-122130200	Weak transcription	Aorta	Aorta

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