Variant report

Variant	rs34565849
Chromosome Location	chr7:122058880-122058881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11973627	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706410	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706411	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706412	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706413	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706415	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13231250	0.89[AMR][1000 genomes]
rs13238360	0.89[AMR][1000 genomes]
rs13239116	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13241783	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17463779	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17463849	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28406245	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28492775	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34252702	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35090045	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35168749	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35636140	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35710523	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35760934	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71571077	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71573096	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71573097	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9656294	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122003200-122061000	Weak transcription	Aorta	Aorta
2	chr7:122007400-122073000	Weak transcription	Lung	lung
3	chr7:122013800-122081800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr7:122022400-122095000	Weak transcription	Gastric	stomach
5	chr7:122033600-122061000	Weak transcription	Pancreas	Pancrea
6	chr7:122045800-122063200	Weak transcription	Ovary	ovary
7	chr7:122047000-122155400	Weak transcription	Left Ventricle	heart
8	chr7:122053000-122059800	Weak transcription	Right Atrium	heart
9	chr7:122055800-122071200	Weak transcription	Fetal Lung	lung
10	chr7:122056200-122122200	Weak transcription	Liver	Liver
11	chr7:122056600-122069600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:122057000-122071000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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