Variant report

Variant	rs34252702
Chromosome Location	chr7:122048924-122048925
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10239128	0.86[EUR][1000 genomes]
rs11973627	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11984390	0.86[EUR][1000 genomes]
rs12706410	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706411	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706412	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706413	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706415	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13231250	0.86[EUR][1000 genomes]
rs13239116	0.87[EUR][1000 genomes]
rs13241783	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17463779	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17463849	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28406245	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28492775	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34133916	0.86[EUR][1000 genomes]
rs34565849	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35090045	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35168749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35636140	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35710523	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35760934	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71571077	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71573096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71573097	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9656294	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121957400-122051200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:122003200-122061000	Weak transcription	Aorta	Aorta
3	chr7:122007400-122073000	Weak transcription	Lung	lung
4	chr7:122013800-122081800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr7:122017400-122055200	Weak transcription	Liver	Liver
6	chr7:122022200-122052800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr7:122022400-122095000	Weak transcription	Gastric	stomach
8	chr7:122023800-122050000	Weak transcription	Right Ventricle	heart
9	chr7:122026000-122052400	Weak transcription	Fetal Lung	lung
10	chr7:122027200-122052800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:122033600-122061000	Weak transcription	Pancreas	Pancrea
12	chr7:122040600-122057800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr7:122045000-122049000	Weak transcription	Fetal Intestine Small	intestine
14	chr7:122045800-122063200	Weak transcription	Ovary	ovary
15	chr7:122046800-122050400	Weak transcription	Stomach Mucosa	stomach
16	chr7:122047000-122155400	Weak transcription	Left Ventricle	heart
17	chr7:122047400-122052800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr7:122047600-122053400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr7:122047800-122052400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr7:122047800-122052600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr7:122047800-122052600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr7:122047800-122053200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr7:122047800-122053200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr7:122047800-122056400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr7:122048600-122052600	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr7:122048600-122053200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr7:122048800-122052800	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr7:122048800-122053400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:122048800-122056600	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links