Variant report

Variant	rs13239116
Chromosome Location	chr7:122087676-122087677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10235626	0.82[AMR][1000 genomes]
rs10238269	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10239128	0.82[AMR][1000 genomes]
rs10246078	0.82[AMR][1000 genomes]
rs10269606	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10270544	0.84[AFR][1000 genomes]
rs11973627	0.87[EUR][1000 genomes]
rs11984390	0.98[EUR][1000 genomes]
rs12706410	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12706411	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12706412	0.89[EUR][1000 genomes]
rs12706413	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12706415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13222975	0.82[AMR][1000 genomes]
rs13241783	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17380636	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17463779	0.87[EUR][1000 genomes]
rs17463849	0.87[EUR][1000 genomes]
rs28406245	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28487917	0.82[AMR][1000 genomes]
rs28492775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28522818	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs28729738	0.84[AFR][1000 genomes]
rs34133916	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs34252702	0.87[EUR][1000 genomes]
rs34427116	0.81[AMR][1000 genomes]
rs34565849	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35090045	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35168749	0.87[EUR][1000 genomes]
rs35337102	0.82[AMR][1000 genomes]
rs35636140	0.87[EUR][1000 genomes]
rs35710523	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35760934	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35866765	0.82[AMR][1000 genomes]
rs6955734	0.82[AMR][1000 genomes]
rs6980172	0.82[AMR][1000 genomes]
rs71571077	0.87[EUR][1000 genomes]
rs71573096	0.87[EUR][1000 genomes]
rs71573097	1.00[EUR][1000 genomes]
rs9656294	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122022400-122095000	Weak transcription	Gastric	stomach
2	chr7:122047000-122155400	Weak transcription	Left Ventricle	heart
3	chr7:122056200-122122200	Weak transcription	Liver	Liver
4	chr7:122061200-122095200	Weak transcription	Aorta	Aorta
5	chr7:122078600-122091000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:122080400-122090600	Weak transcription	Pancreas	Pancrea
7	chr7:122082600-122090600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:122084600-122095600	Weak transcription	Fetal Lung	lung
9	chr7:122084800-122118600	Weak transcription	Lung	lung
10	chr7:122085000-122090800	Weak transcription	Ovary	ovary
11	chr7:122085400-122088400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr7:122085400-122088600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr7:122086600-122089000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:122086600-122092000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr7:122086800-122088200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr7:122087000-122088600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr7:122087400-122090000	Enhancers	H1 Cell Line	embryonic stem cell
18	chr7:122087600-122107600	Weak transcription	Fetal Intestine Small	intestine

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