Variant report

Variant	rs11984390
Chromosome Location	chr7:122074148-122074149
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10235626	0.85[CEU][hapmap]
rs10238269	0.82[CEU][hapmap]
rs10239128	0.80[EUR][1000 genomes]
rs10246078	0.85[CEU][hapmap]
rs10264820	0.85[CEU][hapmap]
rs10269374	0.85[CEU][hapmap]
rs11971202	1.00[YRI][hapmap]
rs11973627	0.86[EUR][1000 genomes]
rs11973937	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs12706410	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs12706411	0.84[EUR][1000 genomes]
rs12706412	0.82[CEU][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12706413	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs12706415	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs13222975	0.85[CEU][hapmap]
rs13231250	0.80[EUR][1000 genomes]
rs13238360	0.85[CEU][hapmap]
rs13239116	0.98[EUR][1000 genomes]
rs13241783	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs17380636	0.85[CEU][hapmap]
rs17463779	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs17463849	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs28406245	0.98[EUR][1000 genomes]
rs28492775	0.98[EUR][1000 genomes]
rs34133916	0.80[EUR][1000 genomes]
rs34252702	0.86[EUR][1000 genomes]
rs35090045	0.82[EUR][1000 genomes]
rs35168749	0.86[EUR][1000 genomes]
rs35636140	0.86[EUR][1000 genomes]
rs35710523	0.98[EUR][1000 genomes]
rs35760934	0.82[EUR][1000 genomes]
rs6947220	0.85[CEU][hapmap]
rs6955734	0.85[CEU][hapmap]
rs6980172	0.85[CEU][hapmap]
rs71571077	0.86[EUR][1000 genomes]
rs71573096	0.86[EUR][1000 genomes]
rs71573097	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9656294	1.00[CEU][hapmap];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122013800-122081800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr7:122022400-122095000	Weak transcription	Gastric	stomach
3	chr7:122047000-122155400	Weak transcription	Left Ventricle	heart
4	chr7:122056200-122122200	Weak transcription	Liver	Liver
5	chr7:122061200-122095200	Weak transcription	Aorta	Aorta
6	chr7:122069000-122078400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:122070400-122074200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:122071400-122076400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr7:122071600-122076400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr7:122071600-122076600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr7:122071800-122076600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr7:122071800-122078000	Weak transcription	Brain Germinal Matrix	brain
13	chr7:122072200-122076200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:122072600-122077000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr7:122073600-122074200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:122073800-122074400	Enhancers	HepG2	liver
17	chr7:122073800-122074600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:122073800-122074600	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr7:122073800-122074800	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr7:122073800-122074800	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr7:122074000-122074200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:122074000-122074400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr7:122074000-122074600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr7:122074000-122074600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr7:122074000-122078000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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