Variant report

Variant	rs6947220
Chromosome Location	chr7:122056965-122056966
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10231284	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10235626	1.00[CEU][hapmap]
rs10238269	1.00[CEU][hapmap]
rs10241493	0.90[ASN][1000 genomes]
rs10246078	1.00[CEU][hapmap]
rs10248008	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10251826	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10256973	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10258850	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10264820	1.00[CEU][hapmap]
rs10266852	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10268918	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10269374	1.00[CEU][hapmap]
rs10270700	0.95[ASN][1000 genomes]
rs10270868	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10272104	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10275217	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10277048	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10277588	0.95[ASN][1000 genomes]
rs10277691	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11767048	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11973627	0.85[CEU][hapmap];0.82[AFR][1000 genomes]
rs11984390	0.85[CEU][hapmap]
rs12706410	1.00[CEU][hapmap]
rs12706412	1.00[CEU][hapmap]
rs12706413	0.85[CEU][hapmap]
rs12706415	0.85[CEU][hapmap]
rs12706423	1.00[JPT][hapmap]
rs13222975	1.00[CEU][hapmap]
rs13238360	1.00[CEU][hapmap]
rs13241783	0.85[CEU][hapmap]
rs17380636	1.00[CEU][hapmap]
rs17463779	1.00[CEU][hapmap]
rs17463849	1.00[CEU][hapmap]
rs28380284	0.95[ASN][1000 genomes]
rs28538086	0.95[ASN][1000 genomes]
rs28555167	0.95[ASN][1000 genomes]
rs28648607	0.95[ASN][1000 genomes]
rs28648932	0.95[ASN][1000 genomes]
rs28684792	0.95[ASN][1000 genomes]
rs28712478	0.95[ASN][1000 genomes]
rs28735372	0.95[ASN][1000 genomes]
rs57057655	0.95[ASN][1000 genomes]
rs57454175	0.95[ASN][1000 genomes]
rs57818732	0.95[ASN][1000 genomes]
rs58891896	0.95[ASN][1000 genomes]
rs60821982	0.95[ASN][1000 genomes]
rs61588302	0.95[ASN][1000 genomes]
rs6947805	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6948337	0.85[CHB][hapmap];0.95[ASN][1000 genomes]
rs6949798	0.95[ASN][1000 genomes]
rs6949994	0.95[ASN][1000 genomes]
rs6951877	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6955734	1.00[CEU][hapmap]
rs6956554	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6959220	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6963383	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6970658	0.86[ASN][1000 genomes]
rs6979694	0.95[ASN][1000 genomes]
rs6980172	1.00[CEU][hapmap]
rs73431526	0.95[ASN][1000 genomes]
rs73431531	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs73431532	0.95[ASN][1000 genomes]
rs73431535	0.95[ASN][1000 genomes]
rs73431538	0.95[ASN][1000 genomes]
rs73431539	0.95[ASN][1000 genomes]
rs73431544	0.95[ASN][1000 genomes]
rs73431546	0.95[ASN][1000 genomes]
rs73431553	0.95[ASN][1000 genomes]
rs73431563	0.95[ASN][1000 genomes]
rs73431568	0.95[ASN][1000 genomes]
rs73431574	0.95[ASN][1000 genomes]
rs73431579	0.95[ASN][1000 genomes]
rs73431588	0.86[ASN][1000 genomes]
rs73431590	0.86[ASN][1000 genomes]
rs73431597	0.86[ASN][1000 genomes]
rs9656294	0.85[CEU][hapmap]
rs9918663	0.82[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122003200-122061000	Weak transcription	Aorta	Aorta
2	chr7:122007400-122073000	Weak transcription	Lung	lung
3	chr7:122013800-122081800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr7:122022400-122095000	Weak transcription	Gastric	stomach
5	chr7:122033600-122061000	Weak transcription	Pancreas	Pancrea
6	chr7:122040600-122057800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr7:122045800-122063200	Weak transcription	Ovary	ovary
8	chr7:122047000-122155400	Weak transcription	Left Ventricle	heart
9	chr7:122053000-122059800	Weak transcription	Right Atrium	heart
10	chr7:122053800-122057400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:122054800-122057800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:122055000-122057800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:122055400-122057600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr7:122055800-122071200	Weak transcription	Fetal Lung	lung
15	chr7:122056000-122057000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr7:122056000-122058000	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr7:122056200-122122200	Weak transcription	Liver	Liver
18	chr7:122056400-122057600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr7:122056400-122057800	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr7:122056600-122057200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr7:122056600-122069600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:122056800-122057000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:122056800-122057400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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