Variant report

Variant	rs28648932
Chromosome Location	chr7:122102355-122102356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10231284	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10241493	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10248008	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10251826	0.81[ASN][1000 genomes]
rs10256973	0.81[ASN][1000 genomes]
rs10258850	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10266852	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10268918	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10270700	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10270868	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10272104	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10275217	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277048	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277588	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277691	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28380284	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28538086	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28555167	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28648607	1.00[ASN][1000 genomes]
rs28684792	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28712478	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28735372	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57057655	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57454175	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57818732	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58891896	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60821982	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61588302	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6947220	0.95[ASN][1000 genomes]
rs6947805	0.95[ASN][1000 genomes]
rs6948337	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6949798	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6949994	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6951877	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6956554	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6959220	1.00[ASN][1000 genomes]
rs6963383	1.00[ASN][1000 genomes]
rs6970658	0.91[ASN][1000 genomes]
rs6979694	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431526	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431531	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431532	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431535	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431538	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431539	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431544	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431546	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431553	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431563	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431568	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431574	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431579	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431588	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs73431590	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs73431597	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs73431600	0.81[ASN][1000 genomes]
rs73431602	0.81[ASN][1000 genomes]
rs73433705	0.81[ASN][1000 genomes]
rs73433724	0.81[ASN][1000 genomes]
rs73444460	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122047000-122155400	Weak transcription	Left Ventricle	heart
2	chr7:122056200-122122200	Weak transcription	Liver	Liver
3	chr7:122084800-122118600	Weak transcription	Lung	lung
4	chr7:122087600-122107600	Weak transcription	Fetal Intestine Small	intestine
5	chr7:122089000-122110400	Weak transcription	HepG2	liver
6	chr7:122091400-122113000	Weak transcription	Pancreas	Pancrea
7	chr7:122091400-122130200	Weak transcription	Ovary	ovary
8	chr7:122091400-122132800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr7:122095400-122111400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:122098400-122108800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr7:122098400-122114400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr7:122098800-122104000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr7:122098800-122108200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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