Variant report

Variant	rs73431539
Chromosome Location	chr7:122071595-122071596
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10231284	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10241493	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10248008	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10251826	0.81[ASN][1000 genomes]
rs10256973	0.81[ASN][1000 genomes]
rs10258850	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10266852	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10268918	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10270700	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10270868	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10272104	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10275217	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277048	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277588	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277691	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28380284	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28538086	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28555167	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28648607	1.00[ASN][1000 genomes]
rs28648932	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28684792	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28712478	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28735372	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57057655	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57454175	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57818732	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58891896	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60821982	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61588302	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6947220	0.95[ASN][1000 genomes]
rs6947805	0.95[ASN][1000 genomes]
rs6948337	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6949798	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6949994	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6951877	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6956554	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6959220	1.00[ASN][1000 genomes]
rs6963383	1.00[ASN][1000 genomes]
rs6970658	0.91[ASN][1000 genomes]
rs6979694	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431526	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431531	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431532	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431538	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431544	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431546	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431553	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431563	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431568	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431574	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431579	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431588	0.91[ASN][1000 genomes]
rs73431590	0.91[ASN][1000 genomes]
rs73431597	0.91[ASN][1000 genomes]
rs73431600	0.81[ASN][1000 genomes]
rs73431602	0.81[ASN][1000 genomes]
rs73433705	0.81[ASN][1000 genomes]
rs73433724	0.81[ASN][1000 genomes]
rs73444460	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122007400-122073000	Weak transcription	Lung	lung
2	chr7:122013800-122081800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr7:122022400-122095000	Weak transcription	Gastric	stomach
4	chr7:122047000-122155400	Weak transcription	Left Ventricle	heart
5	chr7:122056200-122122200	Weak transcription	Liver	Liver
6	chr7:122061200-122095200	Weak transcription	Aorta	Aorta
7	chr7:122069000-122078400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:122069200-122071600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr7:122069200-122072200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr7:122069400-122071800	Enhancers	Brain Germinal Matrix	brain
11	chr7:122069600-122071800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr7:122069600-122071800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr7:122069600-122072400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:122069800-122071600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr7:122069800-122071800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:122069800-122072200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr7:122070000-122071800	Enhancers	HUVEC	blood vessel
18	chr7:122070200-122071600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr7:122070200-122072000	Enhancers	H1 Cell Line	embryonic stem cell
20	chr7:122070400-122074200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr7:122070600-122071600	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr7:122071000-122071600	Enhancers	Brain Hippocampus Middle	brain
23	chr7:122071000-122071600	Enhancers	NHLF	lung
24	chr7:122071200-122071600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:122071200-122071600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr7:122071200-122073800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:122071200-122074000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr7:122071400-122074000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr7:122071400-122076400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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