Variant report

Variant	rs28380284
Chromosome Location	chr7:122097752-122097753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:122096730..122099376-chr7:122103321..122106165,2	K562	blood:
2	chr7:122093912..122095943-chr7:122097344..122100333,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10231284	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10241493	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10248008	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10251826	0.81[ASN][1000 genomes]
rs10256973	0.81[ASN][1000 genomes]
rs10258850	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10266852	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10268918	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10270700	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10270868	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10272104	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10275217	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277048	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277588	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277691	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28538086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28555167	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28648607	1.00[ASN][1000 genomes]
rs28648932	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28684792	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28712478	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28735372	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57057655	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57454175	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57818732	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58891896	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60821982	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61588302	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6947220	0.95[ASN][1000 genomes]
rs6947805	0.95[ASN][1000 genomes]
rs6948337	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6949798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6949994	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6951877	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6956554	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6959220	1.00[ASN][1000 genomes]
rs6963383	1.00[ASN][1000 genomes]
rs6970658	0.91[ASN][1000 genomes]
rs6979694	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431526	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431531	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431532	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431535	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431538	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431539	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431544	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431546	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431553	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431563	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431568	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431588	0.91[ASN][1000 genomes]
rs73431590	0.91[ASN][1000 genomes]
rs73431597	0.91[ASN][1000 genomes]
rs73431600	0.81[ASN][1000 genomes]
rs73431602	0.81[ASN][1000 genomes]
rs73433705	0.81[ASN][1000 genomes]
rs73433724	0.81[ASN][1000 genomes]
rs73444460	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122047000-122155400	Weak transcription	Left Ventricle	heart
2	chr7:122056200-122122200	Weak transcription	Liver	Liver
3	chr7:122084800-122118600	Weak transcription	Lung	lung
4	chr7:122087600-122107600	Weak transcription	Fetal Intestine Small	intestine
5	chr7:122089000-122110400	Weak transcription	HepG2	liver
6	chr7:122091200-122097800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:122091400-122097800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:122091400-122113000	Weak transcription	Pancreas	Pancrea
9	chr7:122091400-122130200	Weak transcription	Ovary	ovary
10	chr7:122091400-122132800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr7:122095400-122111400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:122096800-122098600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr7:122097000-122098400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr7:122097200-122098800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr7:122097400-122098600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr7:122097400-122098800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr7:122097400-122098800	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr7:122097600-122098400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr7:122097600-122098400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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