Variant report

Variant	rs73431546
Chromosome Location	chr7:122078823-122078824
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr7:122078647-122078847	MCF10A-Er-Src	breast:	n/a	n/a
2	SIN3A	chr7:122078658-122078882	H1-hESC	embryonic stem cell:	n/a	chr7:122078835-122078843

Variant related genes	Relation type
CADPS2	TF binding region

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10231284	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10241493	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10248008	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10251826	0.81[ASN][1000 genomes]
rs10256973	0.81[ASN][1000 genomes]
rs10258850	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10266852	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10268918	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10270700	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10270868	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10272104	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10275217	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277048	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277588	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277691	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28380284	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28538086	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28555167	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28648607	1.00[ASN][1000 genomes]
rs28648932	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28684792	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28712478	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28735372	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57057655	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57454175	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57818732	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58891896	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60821982	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61588302	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6947220	0.95[ASN][1000 genomes]
rs6947805	0.95[ASN][1000 genomes]
rs6948337	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6949798	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6949994	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6951877	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6956554	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6959220	1.00[ASN][1000 genomes]
rs6963383	1.00[ASN][1000 genomes]
rs6970658	0.91[ASN][1000 genomes]
rs6979694	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431526	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431531	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431535	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431538	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431539	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431544	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431563	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431568	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431574	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431579	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431588	0.91[ASN][1000 genomes]
rs73431590	0.91[ASN][1000 genomes]
rs73431597	0.91[ASN][1000 genomes]
rs73431600	0.81[ASN][1000 genomes]
rs73431602	0.81[ASN][1000 genomes]
rs73433705	0.81[ASN][1000 genomes]
rs73433724	0.81[ASN][1000 genomes]
rs73444460	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122013800-122081800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr7:122022400-122095000	Weak transcription	Gastric	stomach
3	chr7:122047000-122155400	Weak transcription	Left Ventricle	heart
4	chr7:122056200-122122200	Weak transcription	Liver	Liver
5	chr7:122061200-122095200	Weak transcription	Aorta	Aorta
6	chr7:122076600-122079600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:122076600-122080000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:122076800-122080600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:122077800-122079000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr7:122078000-122079000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr7:122078000-122079200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:122078000-122079400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr7:122078400-122079200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr7:122078600-122079200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr7:122078600-122079600	Enhancers	H1 Cell Line	embryonic stem cell
16	chr7:122078600-122080200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr7:122078600-122082200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr7:122078600-122091000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr7:122078800-122080000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr7:122078800-122080000	Weak transcription	Pancreas	Pancrea
21	chr7:122078800-122080200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:122078800-122080400	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr7:122078800-122082000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:122078800-122082200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr7:122078800-122084000	Enhancers	HUES64 Cell Line	embryonic stem cell

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