Variant report

Variant	rs6955734
Chromosome Location	chr7:122128324-122128325
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:122127949..122129961-chr7:122131747..122133350,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10235626	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10238269	1.00[CEU][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10239128	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10246078	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10256973	0.85[CEU][hapmap]
rs10264820	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[EUR][1000 genomes]
rs10269374	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10269606	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11973627	0.85[CEU][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap]
rs11984390	0.85[CEU][hapmap]
rs12706410	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs12706412	1.00[CEU][hapmap]
rs12706413	0.85[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs12706415	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs13222975	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13231250	0.88[EUR][1000 genomes]
rs13238360	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs13239116	0.82[AMR][1000 genomes]
rs13241783	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs17380636	1.00[CEU][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17463779	1.00[CEU][hapmap]
rs17463849	1.00[CEU][hapmap]
rs28406245	0.82[AMR][1000 genomes]
rs28487917	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28492775	0.82[AMR][1000 genomes]
rs28522818	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34133916	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34427116	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35337102	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35866765	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6947220	1.00[CEU][hapmap]
rs6980172	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9656294	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122047000-122155400	Weak transcription	Left Ventricle	heart
2	chr7:122091400-122130200	Weak transcription	Ovary	ovary
3	chr7:122091400-122132800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:122115400-122140000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:122118200-122130200	Weak transcription	Aorta	Aorta
6	chr7:122122800-122132200	Weak transcription	Liver	Liver

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