Variant report

Variant	rs11973627
Chromosome Location	chr7:122056001-122056002
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10235626	0.85[CEU][hapmap]
rs10238269	0.82[CEU][hapmap]
rs10239128	0.86[EUR][1000 genomes]
rs10246078	0.85[CEU][hapmap]
rs10251826	1.00[CEU][hapmap]
rs10264820	0.85[CEU][hapmap];1.00[GIH][hapmap]
rs10269374	0.85[CEU][hapmap]
rs10277048	0.83[ASW][hapmap]
rs11984390	0.86[EUR][1000 genomes]
rs12706410	0.85[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706411	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706412	0.82[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706413	1.00[GIH][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706415	1.00[GIH][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13222975	0.85[CEU][hapmap]
rs13231250	0.86[EUR][1000 genomes]
rs13238360	0.85[CEU][hapmap]
rs13239116	0.87[EUR][1000 genomes]
rs13241783	1.00[GIH][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17380636	0.85[CEU][hapmap]
rs17463779	0.85[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17463849	0.85[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28406245	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28492775	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34133916	0.86[EUR][1000 genomes]
rs34252702	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34565849	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35090045	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35168749	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35636140	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35710523	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35760934	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6947220	0.85[CEU][hapmap];0.82[AFR][1000 genomes]
rs6947805	0.82[AFR][1000 genomes]
rs6951877	0.92[ASW][hapmap];0.81[LWK][hapmap];0.82[AFR][1000 genomes]
rs6955734	0.85[CEU][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap]
rs6980172	0.85[CEU][hapmap]
rs71571077	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71573096	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71573097	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9656294	1.00[GIH][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122003200-122061000	Weak transcription	Aorta	Aorta
2	chr7:122007400-122073000	Weak transcription	Lung	lung
3	chr7:122013800-122081800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr7:122022400-122095000	Weak transcription	Gastric	stomach
5	chr7:122033600-122061000	Weak transcription	Pancreas	Pancrea
6	chr7:122040600-122057800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr7:122045800-122063200	Weak transcription	Ovary	ovary
8	chr7:122047000-122155400	Weak transcription	Left Ventricle	heart
9	chr7:122047800-122056400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:122048800-122056600	Weak transcription	HepG2	liver
11	chr7:122053000-122059800	Weak transcription	Right Atrium	heart
12	chr7:122053400-122056400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:122053800-122056400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr7:122053800-122056600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:122053800-122057400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr7:122054200-122056400	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr7:122054800-122057800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:122055000-122057800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:122055200-122056200	Strong transcription	Liver	Liver
20	chr7:122055400-122056600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr7:122055400-122057600	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr7:122055800-122071200	Weak transcription	Fetal Lung	lung
23	chr7:122056000-122057000	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr7:122056000-122058000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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