Variant report
| Variant | rs10269374 |
|---|---|
| Chromosome Location | chr7:122135617-122135618 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10235626 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs10238269 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs10239128 | 0.88[EUR][1000 genomes] |
| rs10246078 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs10256973 | 0.85[CEU][hapmap] |
| rs10264820 | 1.00[CEU][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10269606 | 0.96[EUR][1000 genomes] |
| rs11973627 | 0.85[CEU][hapmap] |
| rs11984390 | 0.85[CEU][hapmap] |
| rs12706410 | 1.00[CEU][hapmap] |
| rs12706412 | 1.00[CEU][hapmap] |
| rs12706413 | 0.85[CEU][hapmap] |
| rs12706415 | 0.85[CEU][hapmap] |
| rs13222975 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs13231250 | 0.88[EUR][1000 genomes] |
| rs13238360 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs13241783 | 0.85[CEU][hapmap] |
| rs17380636 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs17463779 | 1.00[CEU][hapmap] |
| rs17463849 | 1.00[CEU][hapmap] |
| rs28487917 | 0.96[EUR][1000 genomes] |
| rs28522818 | 0.96[EUR][1000 genomes] |
| rs34133916 | 0.88[EUR][1000 genomes] |
| rs34427116 | 0.96[EUR][1000 genomes] |
| rs35337102 | 0.96[EUR][1000 genomes] |
| rs35866765 | 0.96[EUR][1000 genomes] |
| rs6947220 | 1.00[CEU][hapmap] |
| rs6955734 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs6980172 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs9656294 | 0.85[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1017029 | chr7:121958574-122338623 | Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:122047000-122155400 | Weak transcription | Left Ventricle | heart |
| 2 | chr7:122115400-122140000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
