Variant report

Variant	rs17463779
Chromosome Location	chr7:122051645-122051646
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10235626	1.00[CEU][hapmap]
rs10238269	1.00[CEU][hapmap]
rs10239128	0.86[EUR][1000 genomes]
rs10246078	1.00[CEU][hapmap]
rs10256973	0.85[CEU][hapmap]
rs10264820	1.00[CEU][hapmap]
rs10269374	1.00[CEU][hapmap]
rs11973627	0.85[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11984390	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs12706410	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706411	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706412	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706413	0.85[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706415	0.85[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13222975	1.00[CEU][hapmap]
rs13231250	0.86[EUR][1000 genomes]
rs13238360	1.00[CEU][hapmap]
rs13239116	0.87[EUR][1000 genomes]
rs13241783	0.85[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17380636	1.00[CEU][hapmap]
rs17463849	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28406245	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28492775	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34133916	0.86[EUR][1000 genomes]
rs34252702	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34565849	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35090045	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35168749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35636140	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35710523	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35760934	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6947220	1.00[CEU][hapmap]
rs6955734	1.00[CEU][hapmap]
rs6980172	1.00[CEU][hapmap]
rs71571077	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71573096	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71573097	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9656294	0.85[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122003200-122061000	Weak transcription	Aorta	Aorta
2	chr7:122007400-122073000	Weak transcription	Lung	lung
3	chr7:122013800-122081800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr7:122017400-122055200	Weak transcription	Liver	Liver
5	chr7:122022200-122052800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:122022400-122095000	Weak transcription	Gastric	stomach
7	chr7:122026000-122052400	Weak transcription	Fetal Lung	lung
8	chr7:122027200-122052800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:122033600-122061000	Weak transcription	Pancreas	Pancrea
10	chr7:122040600-122057800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr7:122045800-122063200	Weak transcription	Ovary	ovary
12	chr7:122047000-122155400	Weak transcription	Left Ventricle	heart
13	chr7:122047400-122052800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr7:122047600-122053400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr7:122047800-122052400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr7:122047800-122052600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr7:122047800-122052600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr7:122047800-122053200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:122047800-122053200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:122047800-122056400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr7:122048600-122052600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr7:122048600-122053200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr7:122048800-122052800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr7:122048800-122053400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:122048800-122056600	Weak transcription	HepG2	liver
26	chr7:122049400-122052000	Weak transcription	Adipose Nuclei	Adipose
27	chr7:122050800-122053000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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