Variant report

Variant	rs28522818
Chromosome Location	chr7:122136496-122136497
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10235626	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10238269	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10239128	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10246078	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10258166	0.84[AFR][1000 genomes]
rs10264820	0.96[EUR][1000 genomes]
rs10269374	0.96[EUR][1000 genomes]
rs10269606	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12706412	0.81[EUR][1000 genomes]
rs12706415	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs13222975	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13231250	0.92[EUR][1000 genomes]
rs13238360	1.00[EUR][1000 genomes]
rs13239116	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs13241783	0.82[AMR][1000 genomes]
rs17380636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28390321	0.84[AFR][1000 genomes]
rs28406245	0.82[AMR][1000 genomes]
rs28416120	0.84[AFR][1000 genomes]
rs28487917	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28492775	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs34133916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34427116	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35337102	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35866765	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6955734	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6980172	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9656294	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122047000-122155400	Weak transcription	Left Ventricle	heart
2	chr7:122115400-122140000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:122136400-122138000	Weak transcription	Gastric	stomach

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