Variant report

Variant	rs28390321
Chromosome Location	chr7:122111213-122111214
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10235626	1.00[AFR][1000 genomes]
rs10246078	0.87[AFR][1000 genomes]
rs10258166	1.00[AFR][1000 genomes]
rs10270544	0.87[AFR][1000 genomes]
rs13241783	0.87[AFR][1000 genomes]
rs17380636	0.84[AFR][1000 genomes]
rs28406245	0.87[AFR][1000 genomes]
rs28416120	1.00[AFR][1000 genomes]
rs28487917	1.00[AFR][1000 genomes]
rs28522818	0.84[AFR][1000 genomes]
rs28729738	0.87[AFR][1000 genomes]
rs34133916	0.84[AFR][1000 genomes]
rs35866765	1.00[AFR][1000 genomes]
rs6980172	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122047000-122155400	Weak transcription	Left Ventricle	heart
2	chr7:122056200-122122200	Weak transcription	Liver	Liver
3	chr7:122084800-122118600	Weak transcription	Lung	lung
4	chr7:122091400-122113000	Weak transcription	Pancreas	Pancrea
5	chr7:122091400-122130200	Weak transcription	Ovary	ovary
6	chr7:122091400-122132800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr7:122095400-122111400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:122098400-122114400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:122104800-122123400	Weak transcription	Fetal Stomach	stomach
10	chr7:122110200-122111400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:122110600-122111600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:122110600-122111800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr7:122110600-122111800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr7:122110600-122115400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr7:122110600-122115400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr7:122110800-122111600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr7:122110800-122111800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr7:122111000-122111400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr7:122111200-122111600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr7:122111200-122111800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr7:122111200-122112400	Enhancers	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links