Variant report

Variant	rs28408353
Chromosome Location	chr7:122172118-122172119
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10253515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10258422	0.82[AFR][1000 genomes]
rs10259052	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10269952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10275211	0.82[AFR][1000 genomes]
rs11974506	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28393630	1.00[AMR][1000 genomes]
rs28450014	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6949079	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6952265	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6954982	0.82[AFR][1000 genomes]
rs6960107	0.82[AFR][1000 genomes]
rs73218218	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122169400-122172200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr7:122171000-122172600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr7:122171000-122173200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr7:122171200-122172800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:122171200-122173000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:122171400-122172200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr7:122171600-122172800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:122172000-122172600	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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